HEADER RIBOSOME 31-DEC-69 7SYT TITLE Structure of the wt IRES w/o eIF2 48S initiation complex, closed TITLE 2 conformation. Structure 13(wt) COMPND MOL_ID: 36; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYT n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 197.730 222.732 186.512 1.00 44.18 ATOM 2 CA MET n 1 197.803 223.405 185.222 1.00 44.18 ATOM 3 C MET n 1 196.977 222.670 184.175 1.00 44.18 ATOM 4 O MET n 1 197.075 221.450 184.037 1.00 44.18 ATOM 5 CB MET n 1 199.256 223.529 184.763 1.00 44.18 ATOM 6 CG MET n 1 199.490 224.619 183.732 1.00 44.18 ATOM 7 SD MET n 1 201.093 225.421 183.922 1.00 44.18 ATOM 8 CE MET n 1 200.940 226.760 182.744 1.00 44.18 ATOM 9 N ARG n 2 196.151 223.417 183.448 1.00 41.79 ATOM 10 CA ARG n 2 195.372 222.825 182.373 1.00 41.79 ATOM 11 C ARG n 2 196.211 222.732 181.104 1.00 41.79 ATOM 12 O ARG n 2 197.277 223.344 180.989 1.00 41.79 ATOM 13 CB ARG n 2 194.098 223.633 182.124 1.00 41.79 ATOM 14 CG ARG n 2 194.324 225.116 181.940 1.00 41.79 ATOM 15 CD ARG n 2 193.011 225.881 181.876 1.00 41.79 ATOM 16 NE ARG n 2 192.313 225.716 180.607 1.00 41.79 ATOM 17 CZ ARG n 2 191.299 226.473 180.210 1.00 41.79 ATOM 18 NH1 ARG n 2 190.838 227.459 180.961 1.00 41.79 ATOM 19 NH2 ARG n 2 190.732 226.233 179.031 1.00 41.79 ATOM 20 N ALA n 3 195.713 221.948 180.145 1.00 41.88 ATOM 21 CA ALA n 3 196.497 221.616 178.960 1.00 41.88 ATOM 22 C ALA n 3 196.653 222.802 178.016 1.00 41.88 ATOM 23 O ALA n 3 197.605 222.845 177.225 1.00 41.88 ATOM 24 CB ALA n 3 195.855 220.438 178.229 1.00 41.88 ATOM 25 N LYS n 4 195.739 223.772 178.089 1.00 39.15 ATOM 26 CA LYS n 4 195.719 224.865 177.122 1.00 39.15 ATOM 27 C LYS n 4 196.916 225.793 177.308 1.00 39.15 ATOM 28 O LYS n 4 197.595 226.157 176.339 1.00 39.15 ATOM 29 CB LYS n 4 194.403 225.631 177.253 1.00 39.15 ATOM 30 CG LYS n 4 193.994 226.409 176.025 1.00 39.15 ATOM 31 CD LYS n 4 192.574 226.921 176.176 1.00 39.15 ATOM 32 CE LYS n 4 192.079 227.558 174.893 1.00 39.15 ATOM 33 NZ LYS n 4 190.672 228.023 175.011 1.00 39.15 ATOM 34 N TRP n 5 197.218 226.157 178.555 1.00 42.09 ATOM 35 CA TRP n 5 198.312 227.094 178.784 1.00 42.09 ATOM 36 C TRP n 5 199.672 226.412 178.681 1.00 42.09 ATOM 37 O TRP n 5 200.664 227.062 178.325 1.00 42.09 ATOM 38 CB TRP n 5 198.137 227.794 180.133 1.00 42.09 ATOM 39 CG TRP n 5 196.725 228.295 180.448 1.00 42.09 ATOM 40 CD1 TRP n 5 196.063 228.119 181.625 1.00 42.09 ATOM 41 CD2 TRP n 5 195.835 229.064 179.606 1.00 42.09 ATOM 42 NE1 TRP n 5 194.824 228.703 181.573 1.00 42.09 ATOM 43 CE2 TRP n 5 194.658 229.289 180.348 1.00 42.09 ATOM 44 CE3 TRP n 5 195.915 229.579 178.305 1.00 42.09 ATOM 45 CZ2 TRP n 5 193.576 229.999 179.835 1.00 42.09 ATOM 46 CZ3 TRP n 5 194.836 230.273 177.797 1.00 42.09 ATOM 47 CH2 TRP n 5 193.685 230.483 178.562 1.00 42.09 ATOM 48 N ARG n 6 199.751 225.105 178.968 1.00 43.69 ATOM 49 CA ARG n 6 201.018 224.424 178.717 1.00 43.69 ATOM 50 C ARG n 6 201.248 224.241 177.220 1.00 43.69 ATOM 51 O ARG n 6 202.396 224.308 176.763 1.00 43.69 ATOM 52 CB ARG n 6 201.109 223.082 179.460 1.00 43.69 ATOM 53 CG ARG n 6 200.179 221.978 179.004 1.00 43.69 ATOM 54 CD ARG n 6 200.286 220.733 179.878 1.00 43.69 ATOM 55 NE ARG n 6 199.774 220.951 181.224 1.00 43.69 ATOM 56 CZ ARG n 6 199.887 220.080 182.218 1.00 43.69 ATOM 57 NH1 ARG n 6 200.502 218.923 182.058 1.00 43.69 ATOM 58 NH2 ARG n 6 199.373 220.378 183.404 1.00 43.69 ATOM 59 N LYS n 7 200.173 224.078 176.437 1.00 44.63 ATOM 60 CA LYS n 7 200.311 224.118 174.983 1.00 44.63 ATOM 61 C LYS n 7 200.757 225.497 174.511 1.00 44.63 ATOM 62 O LYS n 7 201.567 225.610 173.584 1.00 44.63 ATOM 63 CB LYS n 7 198.998 223.721 174.307 1.00 44.63 ATOM 64 CG LYS n 7 198.777 222.220 174.194 1.00 44.63 ATOM 65 CD LYS n 7 197.485 221.903 173.455 1.00 44.63 ATOM 66 CE LYS n 7 197.579 222.310 171.990 1.00 44.63 ATOM 67 NZ LYS n 7 196.372 221.917 171.210 1.00 44.63 ATOM 68 N LYS n 8 200.251 226.557 175.152 1.00 43.62 ATOM 69 CA LYS n 8 200.650 227.914 174.778 1.00 43.62 ATOM 70 C LYS n 8 202.122 228.188 175.088 1.00 43.62 ATOM 71 O LYS n 8 202.829 228.789 174.266 1.00 43.62 ATOM 72 CB LYS n 8 199.763 228.943 175.477 1.00 43.62 ATOM 73 CG LYS n 8 199.953 230.349 174.938 1.00 43.62 ATOM 74 CD LYS n 8 198.989 231.336 175.560 1.00 43.62 ATOM 75 CE LYS n 8 199.163 232.713 174.942 1.00 43.62 ATOM 76 NZ LYS n 8 198.857 232.718 173.485 1.00 43.62 ATOM 77 N ARG n 9 202.610 227.752 176.257 1.00 47.75 ATOM 78 CA ARG n 9 204.023 227.975 176.562 1.00 47.75 ATOM 79 C ARG n 9 204.914 227.073 175.713 1.00 47.75 ATOM 80 O ARG n 9 206.053 227.443 175.399 1.00 47.75 ATOM 81 CB ARG n 9 204.323 227.784 178.054 1.00 47.75 ATOM 82 CG ARG n 9 204.117 226.389 178.605 1.00 47.75 ATOM 83 CD ARG n 9 203.941 226.383 180.119 1.00 47.75 ATOM 84 NE ARG n 9 205.220 226.258 180.811 1.00 47.75 ATOM 85 CZ ARG n 9 205.363 226.215 182.129 1.00 47.75 ATOM 86 NH1 ARG n 9 204.321 226.271 182.941 1.00 47.75 ATOM 87 NH2 ARG n 9 206.584 226.110 182.646 1.00 47.75 ATOM 88 N MET n 10 204.398 225.902 175.302 1.00 46.87 ATOM 89 CA MET n 10 205.075 225.099 174.286 1.00 46.87 ATOM 90 C MET n 10 205.200 225.857 172.969 1.00 46.87 ATOM 91 O MET n 10 206.269 225.841 172.351 1.00 46.87 ATOM 92 CB MET n 10 204.320 223.782 174.067 1.00 46.87 ATOM 93 CG MET n 10 204.798 222.952 172.868 1.00 46.87 ATOM 94 SD MET n 10 206.585 222.708 172.738 1.00 46.87 ATOM 95 CE MET n 10 206.728 222.035 171.085 1.00 46.87 ATOM 96 N ARG n 11 204.131 226.537 172.542 1.00 46.36 ATOM 97 CA ARG n 11 204.176 227.318 171.306 1.00 46.36 ATOM 98 C ARG n 11 205.178 228.463 171.408 1.00 46.36 ATOM 99 O ARG n 11 205.921 228.737 170.458 1.00 46.36 ATOM 100 CB ARG n 11 202.785 227.854 170.969 1.00 46.36 ATOM 101 CG ARG n 11 201.788 226.781 170.577 1.00 46.36 ATOM 102 CD ARG n 11 200.422 227.366 170.270 1.00 46.36 ATOM 103 NE ARG n 11 199.435 226.316 170.051 1.00 46.36 ATOM 104 CZ ARG n 11 199.186 225.753 168.878 1.00 46.36 ATOM 105 NH1 ARG n 11 199.828 226.124 167.785 1.00 46.36 ATOM 106 NH2 ARG n 11 198.275 224.789 168.802 1.00 46.36 ATOM 107 N ARG n 12 205.229 229.123 172.571 1.00 49.77 ATOM 108 CA ARG n 12 206.190 230.211 172.769 1.00 49.77 ATOM 109 C ARG n 12 207.634 229.710 172.757 1.00 49.77 ATOM 110 O ARG n 12 208.505 230.326 172.121 1.00 49.77 ATOM 111 CB ARG n 12 205.895 230.955 174.072 1.00 49.77 ATOM 112 CG ARG n 12 204.515 231.584 174.139 1.00 49.77 ATOM 113 CD ARG n 12 204.443 232.636 175.234 1.00 49.77 ATOM 114 NE ARG n 12 204.237 232.046 176.551 1.00 49.77 ATOM 115 CZ ARG n 12 203.193 232.298 177.330 1.00 49.77 ATOM 116 NH1 ARG n 12 202.234 233.128 176.953 1.00 49.77 ATOM 117 NH2 ARG n 12 203.110 231.703 178.516 1.00 49.77 ATOM 118 N LEU n 13 207.910 228.589 173.436 1.00 53.20 ATOM 119 CA LEU n 13 209.283 228.090 173.466 1.00 53.20 ATOM 120 C LEU n 13 209.685 227.508 172.116 1.00 53.20 ATOM 121 O LEU n 13 210.852 227.589 171.726 1.00 53.20 ATOM 122 CB LEU n 13 209.476 227.069 174.597 1.00 53.20 ATOM 123 CG LEU n 13 208.777 225.711 174.753 1.00 53.20 ATOM 124 CD1 LEU n 13 209.464 224.590 173.975 1.00 53.20 ATOM 125 CD2 LEU n 13 208.666 225.345 176.226 1.00 53.20 ATOM 126 N LYS n 14 208.728 226.946 171.374 1.00 55.42 ATOM 127 CA LYS n 14 209.018 226.458 170.029 1.00 55.42 ATOM 128 C LYS n 14 209.294 227.614 169.074 1.00 55.42 ATOM 129 O LYS n 14 210.161 227.515 168.199 1.00 55.42 ATOM 130 CB LYS n 14 207.858 225.596 169.525 1.00 55.42 ATOM 131 CG LYS n 14 208.092 224.946 168.169 1.00 55.42 ATOM 132 CD LYS n 14 206.939 224.031 167.788 1.00 55.42 ATOM 133 CE LYS n 14 207.076 223.525 166.361 1.00 55.42 ATOM 134 NZ LYS n 14 208.251 222.629 166.192 1.00 55.42 ATOM 135 N ARG n 15 208.573 228.729 169.244 1.00 57.94 ATOM 136 CA ARG n 15 208.825 229.920 168.435 1.00 57.94 ATOM 137 C ARG n 15 210.208 230.500 168.715 1.00 57.94 ATOM 138 O ARG n 15 210.952 230.841 167.784 1.00 57.94 ATOM 139 CB ARG n 15 207.732 230.960 168.695 1.00 57.94 ATOM 140 CG ARG n 15 208.095 232.384 168.296 1.00 57.94 ATOM 141 CD ARG n 15 208.020 232.590 166.792 1.00 57.94 ATOM 142 NE ARG n 15 206.645 232.667 166.315 1.00 57.94 ATOM 143 CZ ARG n 15 205.919 233.776 166.297 1.00 57.94 ATOM 144 NH1 ARG n 15 206.404 234.926 166.736 1.00 57.94 ATOM 145 NH2 ARG n 15 204.675 233.731 165.829 1.00 57.94 ATOM 146 N LYS n 16 210.589 230.587 169.995 1.00 62.58 ATOM 147 CA LYS n 16 211.912 231.126 170.307 1.00 62.58 ATOM 148 C LYS n 16 213.019 230.143 169.922 1.00 62.58 ATOM 149 O LYS n 16 214.117 230.562 169.537 1.00 62.58 ATOM 150 CB LYS n 16 212.001 231.534 171.784 1.00 62.58 ATOM 151 CG LYS n 16 212.120 230.413 172.798 1.00 62.58 ATOM 152 CD LYS n 16 212.845 230.869 174.054 1.00 62.58 ATOM 153 CE LYS n 16 211.871 231.382 175.101 1.00 62.58 ATOM 154 NZ LYS n 16 212.577 231.885 176.312 1.00 62.58 ATOM 155 N ARG n 17 212.732 228.835 169.953 1.00 59.54 ATOM 156 CA ARG n 17 213.706 227.852 169.489 1.00 59.54 ATOM 157 C ARG n 17 213.892 227.927 167.980 1.00 59.54 ATOM 158 O ARG n 17 215.008 227.761 167.481 1.00 59.54 ATOM 159 CB ARG n 17 213.282 226.443 169.900 1.00 59.54 ATOM 160 CG ARG n 17 213.717 226.027 171.301 1.00 59.54 ATOM 161 CD ARG n 17 213.219 224.628 171.670 1.00 59.54 ATOM 162 NE ARG n 17 213.856 223.582 170.875 1.00 59.54 ATOM 163 CZ ARG n 17 213.297 222.973 169.838 1.00 59.54 ATOM 164 NH1 ARG n 17 212.065 223.257 169.450 1.00 59.54 ATOM 165 NH2 ARG n 17 213.997 222.063 169.167 1.00 59.54 ATOM 166 N ARG n 18 212.812 228.186 167.238 1.00 71.57 ATOM 167 CA ARG n 18 212.933 228.371 165.794 1.00 71.57 ATOM 168 C ARG n 18 213.677 229.659 165.461 1.00 71.57 ATOM 169 O ARG n 18 214.422 229.714 164.474 1.00 71.57 ATOM 170 CB ARG n 18 211.548 228.364 165.146 1.00 71.57 ATOM 171 CG ARG n 18 211.070 226.984 164.729 1.00 71.57 ATOM 172 CD ARG n 18 209.748 227.055 163.989 1.00 71.57 ATOM 173 NE ARG n 18 208.654 227.452 164.869 1.00 71.57 ATOM 174 CZ ARG n 18 207.377 227.472 164.513 1.00 71.57 ATOM 175 NH1 ARG n 18 206.992 227.116 163.299 1.00 71.57 ATOM 176 NH2 ARG n 18 206.463 227.859 165.398 1.00 71.57 ATOM 177 N LYS n 19 213.491 230.702 166.278 1.00 83.42 ATOM 178 CA LYS n 19 214.238 231.943 166.075 1.00 83.42 ATOM 179 C LYS n 19 215.730 231.743 166.335 1.00 83.42 ATOM 180 O LYS n 19 216.572 232.232 165.573 1.00 83.42 ATOM 181 CB LYS n 19 213.674 233.051 166.964 1.00 83.42 ATOM 182 CG LYS n 19 214.288 234.418 166.703 1.00 83.42 ATOM 183 CD LYS n 19 213.657 235.082 165.488 1.00 83.42 ATOM 184 CE LYS n 19 213.907 236.583 165.474 1.00 83.42 ATOM 185 NZ LYS n 19 212.841 237.343 166.185 1.00 83.42 ATOM 186 N MET n 20 216.077 231.001 167.394 1.00 92.76 ATOM 187 CA MET n 20 217.488 230.699 167.643 1.00 92.76 ATOM 188 C MET n 20 218.043 229.705 166.625 1.00 92.76 ATOM 189 O MET n 20 219.252 229.681 166.374 1.00 92.76 ATOM 190 CB MET n 20 217.688 230.179 169.069 1.00 92.76 ATOM 191 CG MET n 20 217.245 231.140 170.160 1.00 92.76 ATOM 192 SD MET n 20 218.594 232.158 170.785 1.00 92.76 ATOM 193 CE MET n 20 217.718 233.183 171.963 1.00 92.76 ATOM 194 N ARG n 21 217.178 228.882 166.026 1.00110.74 ATOM 195 CA ARG n 21 217.593 228.028 164.917 1.00110.74 ATOM 196 C ARG n 21 217.961 228.853 163.692 1.00110.74 ATOM 197 O ARG n 21 219.009 228.629 163.075 1.00110.74 ATOM 198 CB ARG n 21 216.475 227.040 164.576 1.00110.74 ATOM 199 CG ARG n 21 216.948 225.681 164.099 1.00110.74 ATOM 200 CD ARG n 21 217.969 225.080 165.042 1.00110.74 ATOM 201 NE ARG n 21 218.605 223.900 164.472 1.00110.74 ATOM 202 CZ ARG n 21 219.652 223.287 164.997 1.00110.74 ATOM 203 NH1 ARG n 21 220.246 223.755 166.075 1.00110.74 ATOM 204 NH2 ARG n 21 220.118 222.186 164.417 1.00110.74 ATOM 205 N GLN n 22 217.111 229.815 163.327 1.00109.23 ATOM 206 CA GLN n 22 217.396 230.649 162.164 1.00109.23 ATOM 207 C GLN n 22 218.538 231.624 162.427 1.00109.23 ATOM 208 O GLN n 22 219.206 232.059 161.481 1.00109.23 ATOM 209 CB GLN n 22 216.142 231.406 161.730 1.00109.23 ATOM 210 CG GLN n 22 215.186 230.579 160.889 1.00109.23 ATOM 211 CD GLN n 22 214.036 231.399 160.343 1.00109.23 ATOM 212 OE1 GLN n 22 213.904 232.584 160.648 1.00109.23 ATOM 213 NE2 GLN n 22 213.199 230.773 159.524 1.00109.23 ATOM 214 N ARG n 23 218.773 231.988 163.687 1.00113.19 ATOM 215 CA ARG n 23 219.875 232.884 164.014 1.00113.19 ATOM 216 C ARG n 23 221.126 232.153 164.487 1.00113.19 ATOM 217 O ARG n 23 222.107 232.814 164.845 1.00113.19 ATOM 218 CB ARG n 23 219.430 233.891 165.078 1.00113.19 ATOM 219 CG ARG n 23 218.364 234.870 164.601 1.00113.19 ATOM 220 CD ARG n 23 218.748 235.530 163.281 1.00113.19 ATOM 221 NE ARG n 23 217.580 235.976 162.530 1.00113.19 ATOM 222 CZ ARG n 23 217.125 235.393 161.429 1.00113.19 ATOM 223 NH1 ARG n 23 217.729 234.340 160.904 1.00113.19 ATOM 224 NH2 ARG n 23 216.039 235.882 160.837 1.00113.19 ATOM 225 N SER n 24 221.122 230.819 164.501 1.00118.26 ATOM 226 CA SER n 24 222.277 230.047 164.944 1.00118.26 ATOM 227 C SER n 24 222.597 228.917 163.971 1.00118.26 ATOM 228 O SER n 24 222.823 227.777 164.387 1.00118.26 ATOM 229 CB SER n 24 222.053 229.494 166.351 1.00118.26 ATOM 230 OG SER n 24 221.871 230.544 167.286 1.00118.26 ATOM 231 N LYS n 25 222.619 229.215 162.676 1.00118.48 ATOM 232 CA LYS n 25 222.947 228.212 161.668 1.00118.48 ATOM 233 C LYS n 25 224.456 228.031 161.548 1.00118.48 ATOM 234 O LYS n 25 224.947 227.457 160.576 1.00118.48 ATOM 235 CB LYS n 25 222.354 228.595 160.311 1.00118.48 ATOM 236 CG LYS n 25 220.839 228.504 160.246 1.00118.48 ATOM 237 CD LYS n 25 220.364 227.066 160.379 1.00118.48 ATOM 238 CE LYS n 25 218.855 226.964 160.223 1.00118.48 ATOM 239 NZ LYS n 25 218.376 225.560 160.337 1.00118.48 TER