HEADER RIBOSOME 31-DEC-69 7SYU TITLE Structure of the delta dII IRES w/o eIF2 48S initiation complex, TITLE 2 closed conformation. Structure 13(delta dII) COMPND MOL_ID: 35; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYU n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 198.465 223.748 185.488 1.00 64.15 ATOM 2 CA MET n 1 198.677 224.134 184.098 1.00 64.15 ATOM 3 C MET n 1 197.754 223.404 183.141 1.00 64.15 ATOM 4 O MET n 1 197.761 222.177 183.077 1.00 64.15 ATOM 5 CB MET n 1 200.129 223.885 183.683 1.00 64.15 ATOM 6 CG MET n 1 201.088 224.991 184.062 1.00 64.15 ATOM 7 SD MET n 1 200.728 226.523 183.181 1.00 64.15 ATOM 8 CE MET n 1 202.160 226.654 182.113 1.00 64.15 ATOM 9 N ARG n 2 196.954 224.165 182.401 1.00 54.37 ATOM 10 CA ARG n 2 196.207 223.592 181.293 1.00 54.37 ATOM 11 C ARG n 2 197.113 223.462 180.072 1.00 54.37 ATOM 12 O ARG n 2 198.211 224.024 180.024 1.00 54.37 ATOM 13 CB ARG n 2 194.970 224.440 180.982 1.00 54.37 ATOM 14 CG ARG n 2 195.244 225.920 180.784 1.00 54.37 ATOM 15 CD ARG n 2 193.952 226.733 180.730 1.00 54.37 ATOM 16 NE ARG n 2 193.225 226.569 179.477 1.00 54.37 ATOM 17 CZ ARG n 2 192.237 227.357 179.072 1.00 54.37 ATOM 18 NH1 ARG n 2 191.833 228.388 179.795 1.00 54.37 ATOM 19 NH2 ARG n 2 191.637 227.100 177.914 1.00 54.37 ATOM 20 N ALA n 3 196.646 222.694 179.084 1.00 54.91 ATOM 21 CA ALA n 3 197.495 222.340 177.949 1.00 54.91 ATOM 22 C ALA n 3 197.728 223.520 177.013 1.00 54.91 ATOM 23 O ALA n 3 198.720 223.536 176.273 1.00 54.91 ATOM 24 CB ALA n 3 196.879 221.170 177.182 1.00 54.91 ATOM 25 N LYS n 4 196.839 224.516 177.047 1.00 52.78 ATOM 26 CA LYS n 4 196.890 225.615 176.086 1.00 52.78 ATOM 27 C LYS n 4 198.099 226.515 176.323 1.00 52.78 ATOM 28 O LYS n 4 198.846 226.830 175.389 1.00 52.78 ATOM 29 CB LYS n 4 195.595 226.421 176.164 1.00 52.78 ATOM 30 CG LYS n 4 195.385 227.387 175.019 1.00 52.78 ATOM 31 CD LYS n 4 194.005 228.009 175.101 1.00 52.78 ATOM 32 CE LYS n 4 193.692 228.808 173.858 1.00 52.78 ATOM 33 NZ LYS n 4 192.339 229.420 173.934 1.00 52.78 ATOM 34 N TRP n 5 198.324 226.923 177.573 1.00 53.67 ATOM 35 CA TRP n 5 199.419 227.850 177.836 1.00 53.67 ATOM 36 C TRP n 5 200.771 227.146 177.816 1.00 53.67 ATOM 37 O TRP n 5 201.789 227.762 177.479 1.00 53.67 ATOM 38 CB TRP n 5 199.194 228.584 179.159 1.00 53.67 ATOM 39 CG TRP n 5 197.776 229.096 179.400 1.00 53.67 ATOM 40 CD1 TRP n 5 197.042 228.918 180.534 1.00 53.67 ATOM 41 CD2 TRP n 5 196.949 229.883 178.514 1.00 53.67 ATOM 42 NE1 TRP n 5 195.817 229.522 180.413 1.00 53.67 ATOM 43 CE2 TRP n 5 195.733 230.120 179.184 1.00 53.67 ATOM 44 CE3 TRP n 5 197.116 230.406 177.223 1.00 53.67 ATOM 45 CZ2 TRP n 5 194.693 230.849 178.611 1.00 53.67 ATOM 46 CZ3 TRP n 5 196.081 231.121 176.656 1.00 53.67 ATOM 47 CH2 TRP n 5 194.887 231.340 177.350 1.00 53.67 ATOM 48 N ARG n 6 200.808 225.852 178.145 1.00 53.43 ATOM 49 CA ARG n 6 202.065 225.124 178.002 1.00 53.43 ATOM 50 C ARG n 6 202.387 224.856 176.532 1.00 53.43 ATOM 51 O ARG n 6 203.564 224.883 176.143 1.00 53.43 ATOM 52 CB ARG n 6 202.040 223.835 178.837 1.00 53.43 ATOM 53 CG ARG n 6 201.222 222.673 178.300 1.00 53.43 ATOM 54 CD ARG n 6 201.133 221.558 179.327 1.00 53.43 ATOM 55 NE ARG n 6 202.426 221.288 179.944 1.00 53.43 ATOM 56 CZ ARG n 6 203.343 220.472 179.443 1.00 53.43 ATOM 57 NH1 ARG n 6 203.147 219.827 178.305 1.00 53.43 ATOM 58 NH2 ARG n 6 204.488 220.302 180.098 1.00 53.43 ATOM 59 N LYS n 7 201.360 224.669 175.692 1.00 52.18 ATOM 60 CA LYS n 7 201.584 224.622 174.251 1.00 52.18 ATOM 61 C LYS n 7 202.078 225.969 173.742 1.00 52.18 ATOM 62 O LYS n 7 202.949 226.029 172.866 1.00 52.18 ATOM 63 CB LYS n 7 200.298 224.203 173.533 1.00 52.18 ATOM 64 CG LYS n 7 200.475 223.818 172.064 1.00 52.18 ATOM 65 CD LYS n 7 200.064 224.935 171.112 1.00 52.18 ATOM 66 CE LYS n 7 200.169 224.498 169.661 1.00 52.18 ATOM 67 NZ LYS n 7 199.811 225.604 168.731 1.00 52.18 ATOM 68 N LYS n 8 201.546 227.060 174.305 1.00 54.33 ATOM 69 CA LYS n 8 201.989 228.400 173.932 1.00 54.33 ATOM 70 C LYS n 8 203.447 228.646 174.309 1.00 54.33 ATOM 71 O LYS n 8 204.202 229.220 173.516 1.00 54.33 ATOM 72 CB LYS n 8 201.091 229.451 174.581 1.00 54.33 ATOM 73 CG LYS n 8 201.230 230.832 173.970 1.00 54.33 ATOM 74 CD LYS n 8 200.320 231.831 174.658 1.00 54.33 ATOM 75 CE LYS n 8 200.202 233.113 173.853 1.00 54.33 ATOM 76 NZ LYS n 8 199.509 232.897 172.553 1.00 54.33 ATOM 77 N ARG n 9 203.865 228.227 175.510 1.00 58.86 ATOM 78 CA ARG n 9 205.254 228.459 175.903 1.00 58.86 ATOM 79 C ARG n 9 206.209 227.577 175.103 1.00 58.86 ATOM 80 O ARG n 9 207.316 228.012 174.759 1.00 58.86 ATOM 81 CB ARG n 9 205.455 228.277 177.415 1.00 58.86 ATOM 82 CG ARG n 9 205.360 226.869 177.969 1.00 58.86 ATOM 83 CD ARG n 9 205.411 226.840 179.488 1.00 58.86 ATOM 84 NE ARG n 9 206.386 227.783 180.026 1.00 58.86 ATOM 85 CZ ARG n 9 206.321 228.318 181.238 1.00 58.86 ATOM 86 NH1 ARG n 9 205.347 228.010 182.080 1.00 58.86 ATOM 87 NH2 ARG n 9 207.259 229.182 181.618 1.00 58.86 ATOM 88 N MET n 10 205.785 226.353 174.751 1.00 58.08 ATOM 89 CA MET n 10 206.612 225.541 173.862 1.00 58.08 ATOM 90 C MET n 10 206.677 226.137 172.462 1.00 58.08 ATOM 91 O MET n 10 207.703 226.017 171.787 1.00 58.08 ATOM 92 CB MET n 10 206.093 224.106 173.813 1.00 58.08 ATOM 93 CG MET n 10 206.298 223.376 175.119 1.00 58.08 ATOM 94 SD MET n 10 206.122 221.592 175.020 1.00 58.08 ATOM 95 CE MET n 10 207.067 221.134 176.467 1.00 58.08 ATOM 96 N ARG n 11 205.614 226.824 172.039 1.00 59.56 ATOM 97 CA ARG n 11 205.620 227.523 170.758 1.00 59.56 ATOM 98 C ARG n 11 206.609 228.686 170.755 1.00 59.56 ATOM 99 O ARG n 11 207.355 228.875 169.785 1.00 59.56 ATOM 100 CB ARG n 11 204.204 228.004 170.450 1.00 59.56 ATOM 101 CG ARG n 11 203.410 227.079 169.551 1.00 59.56 ATOM 102 CD ARG n 11 202.433 227.885 168.728 1.00 59.56 ATOM 103 NE ARG n 11 203.074 229.010 168.061 1.00 59.56 ATOM 104 CZ ARG n 11 202.420 230.074 167.619 1.00 59.56 ATOM 105 NH1 ARG n 11 201.110 230.182 167.755 1.00 59.56 ATOM 106 NH2 ARG n 11 203.097 231.060 167.040 1.00 59.56 ATOM 107 N ARG n 12 206.631 229.479 171.835 1.00 60.56 ATOM 108 CA ARG n 12 207.591 230.584 171.911 1.00 60.56 ATOM 109 C ARG n 12 209.032 230.092 172.001 1.00 60.56 ATOM 110 O ARG n 12 209.929 230.679 171.382 1.00 60.56 ATOM 111 CB ARG n 12 207.291 231.517 173.083 1.00 60.56 ATOM 112 CG ARG n 12 205.856 231.931 173.236 1.00 60.56 ATOM 113 CD ARG n 12 205.543 232.207 174.686 1.00 60.56 ATOM 114 NE ARG n 12 206.209 233.425 175.126 1.00 60.56 ATOM 115 CZ ARG n 12 205.614 234.603 175.236 1.00 60.56 ATOM 116 NH1 ARG n 12 204.337 234.764 174.932 1.00 60.56 ATOM 117 NH2 ARG n 12 206.319 235.648 175.661 1.00 60.56 ATOM 118 N LEU n 13 209.282 229.025 172.770 1.00 68.22 ATOM 119 CA LEU n 13 210.636 228.474 172.807 1.00 68.22 ATOM 120 C LEU n 13 211.033 227.837 171.478 1.00 68.22 ATOM 121 O LEU n 13 212.206 227.889 171.097 1.00 68.22 ATOM 122 CB LEU n 13 210.809 227.487 173.965 1.00 68.22 ATOM 123 CG LEU n 13 211.148 228.019 175.370 1.00 68.22 ATOM 124 CD1 LEU n 13 212.519 228.680 175.303 1.00 68.22 ATOM 125 CD2 LEU n 13 210.151 228.987 175.990 1.00 68.22 ATOM 126 N LYS n 14 210.074 227.262 170.744 1.00 68.95 ATOM 127 CA LYS n 14 210.369 226.739 169.411 1.00 68.95 ATOM 128 C LYS n 14 210.719 227.865 168.441 1.00 68.95 ATOM 129 O LYS n 14 211.637 227.732 167.621 1.00 68.95 ATOM 130 CB LYS n 14 209.180 225.927 168.896 1.00 68.95 ATOM 131 CG LYS n 14 209.423 225.234 167.565 1.00 68.95 ATOM 132 CD LYS n 14 208.223 224.400 167.141 1.00 68.95 ATOM 133 CE LYS n 14 208.466 223.744 165.790 1.00 68.95 ATOM 134 NZ LYS n 14 207.297 222.947 165.330 1.00 68.95 ATOM 135 N ARG n 15 210.000 228.990 168.535 1.00 69.25 ATOM 136 CA ARG n 15 210.301 230.165 167.715 1.00 69.25 ATOM 137 C ARG n 15 211.683 230.730 168.035 1.00 69.25 ATOM 138 O ARG n 15 212.461 231.056 167.126 1.00 69.25 ATOM 139 CB ARG n 15 209.219 231.227 167.926 1.00 69.25 ATOM 140 CG ARG n 15 209.636 232.653 167.582 1.00 69.25 ATOM 141 CD ARG n 15 209.611 232.910 166.086 1.00 69.25 ATOM 142 NE ARG n 15 208.249 232.981 165.572 1.00 69.25 ATOM 143 CZ ARG n 15 207.511 234.082 165.560 1.00 69.25 ATOM 144 NH1 ARG n 15 207.973 235.228 166.033 1.00 69.25 ATOM 145 NH2 ARG n 15 206.278 234.032 165.066 1.00 69.25 ATOM 146 N LYS n 16 212.008 230.835 169.329 1.00 73.11 ATOM 147 CA LYS n 16 213.314 231.341 169.747 1.00 73.11 ATOM 148 C LYS n 16 214.438 230.400 169.323 1.00 73.11 ATOM 149 O LYS n 16 215.506 230.852 168.886 1.00 73.11 ATOM 150 CB LYS n 16 213.322 231.555 171.262 1.00 73.11 ATOM 151 CG LYS n 16 214.672 231.928 171.855 1.00 73.11 ATOM 152 CD LYS n 16 214.654 231.841 173.372 1.00 73.11 ATOM 153 CE LYS n 16 213.605 232.762 173.972 1.00 73.11 ATOM 154 NZ LYS n 16 213.514 232.607 175.450 1.00 73.11 ATOM 155 N ARG n 17 214.203 229.087 169.424 1.00 78.72 ATOM 156 CA ARG n 17 215.185 228.099 168.991 1.00 78.72 ATOM 157 C ARG n 17 215.415 228.159 167.487 1.00 78.72 ATOM 158 O ARG n 17 216.556 228.050 167.029 1.00 78.72 ATOM 159 CB ARG n 17 214.731 226.700 169.407 1.00 78.72 ATOM 160 CG ARG n 17 215.100 226.320 170.829 1.00 78.72 ATOM 161 CD ARG n 17 215.275 224.820 170.958 1.00 78.72 ATOM 162 NE ARG n 17 214.725 224.322 172.213 1.00 78.72 ATOM 163 CZ ARG n 17 213.576 223.668 172.317 1.00 78.72 ATOM 164 NH1 ARG n 17 212.808 223.448 171.263 1.00 78.72 ATOM 165 NH2 ARG n 17 213.184 223.232 173.511 1.00 78.72 ATOM 166 N ARG n 18 214.345 228.344 166.704 1.00 83.61 ATOM 167 CA ARG n 18 214.498 228.469 165.256 1.00 83.61 ATOM 168 C ARG n 18 215.237 229.748 164.876 1.00 83.61 ATOM 169 O ARG n 18 216.069 229.737 163.958 1.00 83.61 ATOM 170 CB ARG n 18 213.131 228.418 164.575 1.00 83.61 ATOM 171 CG ARG n 18 212.697 227.020 164.171 1.00 83.61 ATOM 172 CD ARG n 18 211.347 227.038 163.473 1.00 83.61 ATOM 173 NE ARG n 18 210.258 227.356 164.388 1.00 83.61 ATOM 174 CZ ARG n 18 208.978 227.393 164.044 1.00 83.61 ATOM 175 NH1 ARG n 18 208.588 227.130 162.808 1.00 83.61 ATOM 176 NH2 ARG n 18 208.068 227.701 164.963 1.00 83.61 ATOM 177 N LYS n 19 214.958 230.853 165.577 1.00 95.02 ATOM 178 CA LYS n 19 215.652 232.112 165.308 1.00 95.02 ATOM 179 C LYS n 19 217.139 232.005 165.646 1.00 95.02 ATOM 180 O LYS n 19 217.998 232.449 164.872 1.00 95.02 ATOM 181 CB LYS n 19 214.989 233.243 166.100 1.00 95.02 ATOM 182 CG LYS n 19 215.676 234.609 166.029 1.00 95.02 ATOM 183 CD LYS n 19 215.922 235.074 164.594 1.00 95.02 ATOM 184 CE LYS n 19 215.678 236.567 164.451 1.00 95.02 ATOM 185 NZ LYS n 19 216.448 237.355 165.453 1.00 95.02 ATOM 186 N MET n 20 217.461 231.387 166.787 1.00104.39 ATOM 187 CA MET n 20 218.859 231.239 167.182 1.00104.39 ATOM 188 C MET n 20 219.574 230.223 166.297 1.00104.39 ATOM 189 O MET n 20 220.778 230.350 166.048 1.00104.39 ATOM 190 CB MET n 20 218.932 230.861 168.669 1.00104.39 ATOM 191 CG MET n 20 220.328 230.726 169.305 1.00104.39 ATOM 192 SD MET n 20 221.223 229.170 169.076 1.00104.39 ATOM 193 CE MET n 20 220.283 228.081 170.144 1.00104.39 ATOM 194 N ARG n 21 218.847 229.221 165.795 1.00118.19 ATOM 195 CA ARG n 21 219.441 228.248 164.885 1.00118.19 ATOM 196 C ARG n 21 219.735 228.873 163.527 1.00118.19 ATOM 197 O ARG n 21 220.759 228.567 162.904 1.00118.19 ATOM 198 CB ARG n 21 218.511 227.043 164.736 1.00118.19 ATOM 199 CG ARG n 21 219.081 225.902 163.912 1.00118.19 ATOM 200 CD ARG n 21 220.164 225.161 164.677 1.00118.19 ATOM 201 NE ARG n 21 220.752 224.090 163.882 1.00118.19 ATOM 202 CZ ARG n 21 221.883 224.200 163.200 1.00118.19 ATOM 203 NH1 ARG n 21 222.589 225.318 163.208 1.00118.19 ATOM 204 NH2 ARG n 21 222.319 223.160 162.495 1.00118.19 ATOM 205 N GLN n 22 218.845 229.750 163.050 1.00112.92 ATOM 206 CA GLN n 22 219.113 230.474 161.811 1.00112.92 ATOM 207 C GLN n 22 220.245 231.480 161.977 1.00112.92 ATOM 208 O GLN n 22 221.029 231.685 161.044 1.00112.92 ATOM 209 CB GLN n 22 217.848 231.178 161.322 1.00112.92 ATOM 210 CG GLN n 22 216.798 230.240 160.751 1.00112.92 ATOM 211 CD GLN n 22 215.499 230.950 160.426 1.00112.92 ATOM 212 OE1 GLN n 22 215.372 232.159 160.622 1.00112.92 ATOM 213 NE2 GLN n 22 214.522 230.199 159.929 1.00112.92 ATOM 214 N ARG n 23 220.354 232.110 163.146 1.00117.83 ATOM 215 CA ARG n 23 221.439 233.056 163.381 1.00117.83 ATOM 216 C ARG n 23 222.729 232.389 163.844 1.00117.83 ATOM 217 O ARG n 23 223.738 233.083 164.012 1.00117.83 ATOM 218 CB ARG n 23 221.006 234.110 164.404 1.00117.83 ATOM 219 CG ARG n 23 219.988 235.105 163.866 1.00117.83 ATOM 220 CD ARG n 23 220.499 235.795 162.609 1.00117.83 ATOM 221 NE ARG n 23 219.420 236.409 161.845 1.00117.83 ATOM 222 CZ ARG n 23 219.002 235.980 160.662 1.00117.83 ATOM 223 NH1 ARG n 23 219.557 234.935 160.070 1.00117.83 ATOM 224 NH2 ARG n 23 218.002 236.614 160.057 1.00117.83 ATOM 225 N SER n 24 222.729 231.070 164.053 1.00128.09 ATOM 226 CA SER n 24 223.921 230.346 164.480 1.00128.09 ATOM 227 C SER n 24 224.129 229.080 163.655 1.00128.09 ATOM 228 O SER n 24 224.385 228.007 164.209 1.00128.09 ATOM 229 CB SER n 24 223.850 230.005 165.968 1.00128.09 ATOM 230 OG SER n 24 223.896 231.177 166.763 1.00128.09 ATOM 231 N LYS n 25 224.018 229.187 162.334 1.00127.69 ATOM 232 CA LYS n 25 224.246 228.048 161.450 1.00127.69 ATOM 233 C LYS n 25 225.730 227.706 161.371 1.00127.69 ATOM 234 O LYS n 25 226.201 227.169 160.368 1.00127.69 ATOM 235 CB LYS n 25 223.700 228.334 160.049 1.00127.69 ATOM 236 CG LYS n 25 222.189 228.234 159.929 1.00127.69 ATOM 237 CD LYS n 25 221.730 226.784 159.905 1.00127.69 ATOM 238 CE LYS n 25 220.241 226.681 159.611 1.00127.69 ATOM 239 NZ LYS n 25 219.802 225.270 159.431 1.00127.69 TER