HEADER RIBOSOME 31-DEC-69 7SYV TITLE Structure of the wt IRES eIF5B-containing pre-48S initiation complex, TITLE 2 open conformation. Structure 14(wt) COMPND MOL_ID: 22; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYV n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 197.459 214.336 193.036 1.00155.14 ATOM 2 CA MET n 1 197.926 214.614 191.683 1.00155.14 ATOM 3 C MET n 1 197.093 213.873 190.647 1.00155.14 ATOM 4 O MET n 1 197.303 212.686 190.405 1.00155.14 ATOM 5 CB MET n 1 199.399 214.232 191.535 1.00155.14 ATOM 6 CG MET n 1 200.039 214.733 190.253 1.00155.14 ATOM 7 SD MET n 1 200.392 216.498 190.300 1.00155.14 ATOM 8 CE MET n 1 201.652 216.623 189.036 1.00155.14 ATOM 9 N ARG n 2 196.143 214.580 190.041 1.00141.13 ATOM 10 CA ARG n 2 195.345 213.992 188.979 1.00141.13 ATOM 11 C ARG n 2 196.174 213.865 187.704 1.00141.13 ATOM 12 O ARG n 2 197.211 214.512 187.535 1.00141.13 ATOM 13 CB ARG n 2 194.092 214.827 188.723 1.00141.13 ATOM 14 CG ARG n 2 194.368 216.301 188.553 1.00141.13 ATOM 15 CD ARG n 2 193.090 217.117 188.604 1.00141.13 ATOM 16 NE ARG n 2 192.495 217.285 187.284 1.00141.13 ATOM 17 CZ ARG n 2 191.495 218.112 187.014 1.00141.13 ATOM 18 NH1 ARG n 2 190.950 218.866 187.954 1.00141.13 ATOM 19 NH2 ARG n 2 191.031 218.184 185.770 1.00141.13 ATOM 20 N ALA n 3 195.694 213.013 186.796 1.00144.21 ATOM 21 CA ALA n 3 196.489 212.619 185.639 1.00144.21 ATOM 22 C ALA n 3 196.617 213.718 184.592 1.00144.21 ATOM 23 O ALA n 3 197.562 213.679 183.797 1.00144.21 ATOM 24 CB ALA n 3 195.891 211.367 184.998 1.00144.21 ATOM 25 N LYS n 4 195.700 214.690 184.575 1.00136.10 ATOM 26 CA LYS n 4 195.712 215.708 183.526 1.00136.10 ATOM 27 C LYS n 4 196.903 216.649 183.670 1.00136.10 ATOM 28 O LYS n 4 197.641 216.884 182.705 1.00136.10 ATOM 29 CB LYS n 4 194.401 216.493 183.542 1.00136.10 ATOM 30 CG LYS n 4 194.343 217.601 182.506 1.00136.10 ATOM 31 CD LYS n 4 193.195 218.556 182.771 1.00136.10 ATOM 32 CE LYS n 4 191.987 218.209 181.925 1.00136.10 ATOM 33 NZ LYS n 4 191.224 219.423 181.526 1.00136.10 ATOM 34 N TRP n 5 197.129 217.175 184.873 1.00143.17 ATOM 35 CA TRP n 5 198.258 218.079 185.056 1.00143.17 ATOM 36 C TRP n 5 199.584 217.334 185.100 1.00143.17 ATOM 37 O TRP n 5 200.619 217.907 184.737 1.00143.17 ATOM 38 CB TRP n 5 198.068 218.923 186.316 1.00143.17 ATOM 39 CG TRP n 5 196.666 219.451 186.529 1.00143.17 ATOM 40 CD1 TRP n 5 195.902 219.281 187.642 1.00143.17 ATOM 41 CD2 TRP n 5 195.874 220.240 185.620 1.00143.17 ATOM 42 NE1 TRP n 5 194.690 219.904 187.490 1.00143.17 ATOM 43 CE2 TRP n 5 194.650 220.508 186.262 1.00143.17 ATOM 44 CE3 TRP n 5 196.091 220.767 184.340 1.00143.17 ATOM 45 CZ2 TRP n 5 193.641 221.255 185.662 1.00143.17 ATOM 46 CZ3 TRP n 5 195.088 221.507 183.748 1.00143.17 ATOM 47 CH2 TRP n 5 193.879 221.745 184.408 1.00143.17 ATOM 48 N ARG n 6 199.570 216.065 185.521 1.00144.79 ATOM 49 CA ARG n 6 200.761 215.228 185.407 1.00144.79 ATOM 50 C ARG n 6 201.149 215.026 183.949 1.00144.79 ATOM 51 O ARG n 6 202.329 215.131 183.591 1.00144.79 ATOM 52 CB ARG n 6 200.523 213.881 186.088 1.00144.79 ATOM 53 CG ARG n 6 201.671 212.898 185.936 1.00144.79 ATOM 54 CD ARG n 6 201.790 211.991 187.147 1.00144.79 ATOM 55 NE ARG n 6 200.494 211.471 187.564 1.00144.79 ATOM 56 CZ ARG n 6 199.971 210.332 187.131 1.00144.79 ATOM 57 NH1 ARG n 6 200.609 209.566 186.262 1.00144.79 ATOM 58 NH2 ARG n 6 198.778 209.953 187.581 1.00144.79 ATOM 59 N LYS n 7 200.159 214.770 183.089 1.00142.02 ATOM 60 CA LYS n 7 200.417 214.651 181.659 1.00142.02 ATOM 61 C LYS n 7 200.854 215.977 181.053 1.00142.02 ATOM 62 O LYS n 7 201.690 215.988 180.145 1.00142.02 ATOM 63 CB LYS n 7 199.173 214.124 180.945 1.00142.02 ATOM 64 CG LYS n 7 199.431 213.634 179.532 1.00142.02 ATOM 65 CD LYS n 7 198.209 213.813 178.652 1.00142.02 ATOM 66 CE LYS n 7 197.220 212.679 178.848 1.00142.02 ATOM 67 NZ LYS n 7 195.878 213.019 178.305 1.00142.02 ATOM 68 N LYS n 8 200.316 217.096 181.549 1.00147.98 ATOM 69 CA LYS n 8 200.738 218.412 181.071 1.00147.98 ATOM 70 C LYS n 8 202.197 218.695 181.420 1.00147.98 ATOM 71 O LYS n 8 202.971 219.164 180.573 1.00147.98 ATOM 72 CB LYS n 8 199.827 219.492 181.656 1.00147.98 ATOM 73 CG LYS n 8 200.249 220.912 181.323 1.00147.98 ATOM 74 CD LYS n 8 199.047 221.819 181.148 1.00147.98 ATOM 75 CE LYS n 8 199.476 223.245 180.854 1.00147.98 ATOM 76 NZ LYS n 8 199.516 223.517 179.392 1.00147.98 ATOM 77 N ARG n 9 202.595 218.395 182.661 1.00154.52 ATOM 78 CA ARG n 9 203.981 218.599 183.076 1.00154.52 ATOM 79 C ARG n 9 204.925 217.653 182.346 1.00154.52 ATOM 80 O ARG n 9 206.046 218.038 181.989 1.00154.52 ATOM 81 CB ARG n 9 204.111 218.417 184.587 1.00154.52 ATOM 82 CG ARG n 9 205.405 218.963 185.161 1.00154.52 ATOM 83 CD ARG n 9 205.462 218.780 186.666 1.00154.52 ATOM 84 NE ARG n 9 205.430 217.372 187.042 1.00154.52 ATOM 85 CZ ARG n 9 205.178 216.930 188.266 1.00154.52 ATOM 86 NH1 ARG n 9 204.931 217.762 189.264 1.00154.52 ATOM 87 NH2 ARG n 9 205.175 215.620 188.495 1.00154.52 ATOM 88 N MET n 10 204.484 216.417 182.102 1.00156.29 ATOM 89 CA MET n 10 205.310 215.460 181.375 1.00156.29 ATOM 90 C MET n 10 205.452 215.860 179.909 1.00156.29 ATOM 91 O MET n 10 206.521 215.684 179.313 1.00156.29 ATOM 92 CB MET n 10 204.705 214.064 181.530 1.00156.29 ATOM 93 CG MET n 10 205.250 212.993 180.618 1.00156.29 ATOM 94 SD MET n 10 205.299 211.429 181.508 1.00156.29 ATOM 95 CE MET n 10 203.562 211.001 181.520 1.00156.29 ATOM 96 N ARG n 11 204.395 216.437 179.328 1.00149.63 ATOM 97 CA ARG n 11 204.469 216.976 177.973 1.00149.63 ATOM 98 C ARG n 11 205.426 218.158 177.896 1.00149.63 ATOM 99 O ARG n 11 206.185 218.287 176.928 1.00149.63 ATOM 100 CB ARG n 11 203.072 217.386 177.507 1.00149.63 ATOM 101 CG ARG n 11 203.012 217.928 176.091 1.00149.63 ATOM 102 CD ARG n 11 201.591 217.910 175.560 1.00149.63 ATOM 103 NE ARG n 11 201.015 216.572 175.593 1.00149.63 ATOM 104 CZ ARG n 11 199.715 216.318 175.639 1.00149.63 ATOM 105 NH1 ARG n 11 198.821 217.292 175.663 1.00149.63 ATOM 106 NH2 ARG n 11 199.301 215.054 175.659 1.00149.63 ATOM 107 N ARG n 12 205.402 219.032 178.908 1.00156.84 ATOM 108 CA ARG n 12 206.340 220.153 178.948 1.00156.84 ATOM 109 C ARG n 12 207.780 219.672 179.097 1.00156.84 ATOM 110 O ARG n 12 208.694 220.223 178.469 1.00156.84 ATOM 111 CB ARG n 12 205.976 221.104 180.087 1.00156.84 ATOM 112 CG ARG n 12 204.721 221.922 179.840 1.00156.84 ATOM 113 CD ARG n 12 204.555 222.999 180.897 1.00156.84 ATOM 114 NE ARG n 12 204.147 222.445 182.182 1.00156.84 ATOM 115 CZ ARG n 12 203.636 223.157 183.177 1.00156.84 ATOM 116 NH1 ARG n 12 203.457 224.464 183.070 1.00156.84 ATOM 117 NH2 ARG n 12 203.298 222.544 184.307 1.00156.84 ATOM 118 N LEU n 13 207.994 218.637 179.916 1.00157.41 ATOM 119 CA LEU n 13 209.326 218.056 180.074 1.00157.41 ATOM 120 C LEU n 13 209.813 217.413 178.778 1.00157.41 ATOM 121 O LEU n 13 210.987 217.555 178.410 1.00157.41 ATOM 122 CB LEU n 13 209.306 217.034 181.212 1.00157.41 ATOM 123 CG LEU n 13 210.427 215.999 181.293 1.00157.41 ATOM 124 CD1 LEU n 13 211.727 216.649 181.735 1.00157.41 ATOM 125 CD2 LEU n 13 210.040 214.869 182.232 1.00157.41 ATOM 126 N LYS n 14 208.919 216.714 178.071 1.00154.43 ATOM 127 CA LYS n 14 209.263 216.111 176.786 1.00154.43 ATOM 128 C LYS n 14 209.588 217.171 175.741 1.00154.43 ATOM 129 O LYS n 14 210.521 216.997 174.947 1.00154.43 ATOM 130 CB LYS n 14 208.118 215.221 176.306 1.00154.43 ATOM 131 CG LYS n 14 208.460 214.362 175.103 1.00154.43 ATOM 132 CD LYS n 14 207.427 213.267 174.894 1.00154.43 ATOM 133 CE LYS n 14 206.196 213.801 174.182 1.00154.43 ATOM 134 NZ LYS n 14 206.477 214.121 172.755 1.00154.43 ATOM 135 N ARG n 15 208.830 218.273 175.729 1.00157.56 ATOM 136 CA ARG n 15 209.110 219.373 174.811 1.00157.56 ATOM 137 C ARG n 15 210.452 220.027 175.115 1.00157.56 ATOM 138 O ARG n 15 211.208 220.358 174.192 1.00157.56 ATOM 139 CB ARG n 15 207.988 220.408 174.873 1.00157.56 ATOM 140 CG ARG n 15 208.129 221.532 173.863 1.00157.56 ATOM 141 CD ARG n 15 207.814 222.876 174.490 1.00157.56 ATOM 142 NE ARG n 15 206.416 222.973 174.890 1.00157.56 ATOM 143 CZ ARG n 15 205.455 223.477 174.128 1.00157.56 ATOM 144 NH1 ARG n 15 205.708 223.944 172.917 1.00157.56 ATOM 145 NH2 ARG n 15 204.210 223.513 174.593 1.00157.56 ATOM 146 N LYS n 16 210.767 220.207 176.403 1.00160.35 ATOM 147 CA LYS n 16 212.056 220.773 176.794 1.00160.35 ATOM 148 C LYS n 16 213.213 219.864 176.395 1.00160.35 ATOM 149 O LYS n 16 214.232 220.338 175.878 1.00160.35 ATOM 150 CB LYS n 16 212.074 221.030 178.301 1.00160.35 ATOM 151 CG LYS n 16 213.364 221.646 178.813 1.00160.35 ATOM 152 CD LYS n 16 213.517 223.076 178.328 1.00160.35 ATOM 153 CE LYS n 16 214.751 223.728 178.926 1.00160.35 ATOM 154 NZ LYS n 16 214.956 225.109 178.411 1.00160.35 ATOM 155 N ARG n 17 213.058 218.551 176.604 1.00162.23 ATOM 156 CA ARG n 17 214.098 217.592 176.232 1.00162.23 ATOM 157 C ARG n 17 214.301 217.536 174.721 1.00162.23 ATOM 158 O ARG n 17 215.443 217.513 174.243 1.00162.23 ATOM 159 CB ARG n 17 213.743 216.209 176.780 1.00162.23 ATOM 160 CG ARG n 17 214.753 215.127 176.449 1.00162.23 ATOM 161 CD ARG n 17 214.268 213.759 176.892 1.00162.23 ATOM 162 NE ARG n 17 213.990 213.722 178.322 1.00162.23 ATOM 163 CZ ARG n 17 212.863 213.273 178.855 1.00162.23 ATOM 164 NH1 ARG n 17 211.874 212.821 178.103 1.00162.23 ATOM 165 NH2 ARG n 17 212.725 213.277 180.178 1.00162.23 ATOM 166 N ARG n 18 213.205 217.542 173.955 1.00170.00 ATOM 167 CA ARG n 18 213.299 217.531 172.497 1.00170.00 ATOM 168 C ARG n 18 213.925 218.814 171.962 1.00170.00 ATOM 169 O ARG n 18 214.736 218.771 171.025 1.00170.00 ATOM 170 CB ARG n 18 211.912 217.325 171.891 1.00170.00 ATOM 171 CG ARG n 18 211.908 217.050 170.397 1.00170.00 ATOM 172 CD ARG n 18 210.496 216.798 169.894 1.00170.00 ATOM 173 NE ARG n 18 209.729 218.035 169.779 1.00170.00 ATOM 174 CZ ARG n 18 208.510 218.209 170.269 1.00170.00 ATOM 175 NH1 ARG n 18 207.887 217.249 170.933 1.00170.00 ATOM 176 NH2 ARG n 18 207.900 219.377 170.089 1.00170.00 ATOM 177 N LYS n 19 213.580 219.964 172.550 1.00176.57 ATOM 178 CA LYS n 19 214.105 221.214 172.018 1.00176.57 ATOM 179 C LYS n 19 215.562 221.392 172.441 1.00176.57 ATOM 180 O LYS n 19 216.351 222.023 171.727 1.00176.57 ATOM 181 CB LYS n 19 213.209 222.384 172.449 1.00176.57 ATOM 182 CG LYS n 19 213.510 223.748 171.797 1.00176.57 ATOM 183 CD LYS n 19 214.472 224.656 172.520 1.00176.57 ATOM 184 CE LYS n 19 214.587 225.976 171.773 1.00176.57 ATOM 185 NZ LYS n 19 215.547 226.924 172.396 1.00176.57 ATOM 186 N MET n 20 215.952 220.787 173.572 1.00178.33 ATOM 187 CA MET n 20 217.365 220.715 173.936 1.00178.33 ATOM 188 C MET n 20 218.129 219.818 172.971 1.00178.33 ATOM 189 O MET n 20 219.288 220.099 172.638 1.00178.33 ATOM 190 CB MET n 20 217.489 220.251 175.402 1.00178.33 ATOM 191 CG MET n 20 218.829 219.671 175.967 1.00178.33 ATOM 192 SD MET n 20 219.588 218.112 175.416 1.00178.33 ATOM 193 CE MET n 20 218.327 216.926 175.872 1.00178.33 ATOM 194 N ARG n 21 217.505 218.719 172.536 1.00176.01 ATOM 195 CA ARG n 21 218.142 217.845 171.556 1.00176.01 ATOM 196 C ARG n 21 218.342 218.564 170.226 1.00176.01 ATOM 197 O ARG n 21 219.400 218.432 169.598 1.00176.01 ATOM 198 CB ARG n 21 217.316 216.570 171.373 1.00176.01 ATOM 199 CG ARG n 21 217.778 215.666 170.237 1.00176.01 ATOM 200 CD ARG n 21 216.784 214.546 169.994 1.00176.01 ATOM 201 NE ARG n 21 217.001 213.425 170.900 1.00176.01 ATOM 202 CZ ARG n 21 217.108 212.160 170.517 1.00176.01 ATOM 203 NH1 ARG n 21 217.015 211.813 169.244 1.00176.01 ATOM 204 NH2 ARG n 21 217.309 211.221 171.436 1.00176.01 ATOM 205 N GLN n 22 217.358 219.362 169.797 1.00183.58 ATOM 206 CA GLN n 22 217.549 220.066 168.530 1.00183.58 ATOM 207 C GLN n 22 218.429 221.309 168.675 1.00183.58 ATOM 208 O GLN n 22 218.977 221.773 167.669 1.00183.58 ATOM 209 CB GLN n 22 216.220 220.433 167.860 1.00183.58 ATOM 210 CG GLN n 22 215.325 221.389 168.601 1.00183.58 ATOM 211 CD GLN n 22 213.851 221.095 168.373 1.00183.58 ATOM 212 OE1 GLN n 22 213.280 220.192 168.982 1.00183.58 ATOM 213 NE2 GLN n 22 213.223 221.874 167.500 1.00183.58 ATOM 214 N ARG n 23 218.587 221.885 169.883 1.00184.51 ATOM 215 CA ARG n 23 219.638 222.899 169.961 1.00184.51 ATOM 216 C ARG n 23 221.021 222.263 170.014 1.00184.51 ATOM 217 O ARG n 23 221.990 222.887 169.569 1.00184.51 ATOM 218 CB ARG n 23 219.554 223.871 171.161 1.00184.51 ATOM 219 CG ARG n 23 219.751 223.301 172.573 1.00184.51 ATOM 220 CD ARG n 23 219.716 224.391 173.677 1.00184.51 ATOM 221 NE ARG n 23 218.494 225.148 173.922 1.00184.51 ATOM 222 CZ ARG n 23 217.537 224.778 174.762 1.00184.51 ATOM 223 NH1 ARG n 23 217.626 223.663 175.465 1.00184.51 ATOM 224 NH2 ARG n 23 216.499 225.585 174.958 1.00184.51 ATOM 225 N SER n 24 221.135 221.044 170.554 1.00188.13 ATOM 226 CA SER n 24 222.432 220.385 170.638 1.00188.13 ATOM 227 C SER n 24 222.928 219.918 169.276 1.00188.13 ATOM 228 O SER n 24 224.137 219.938 169.021 1.00188.13 ATOM 229 CB SER n 24 222.358 219.200 171.601 1.00188.13 ATOM 230 OG SER n 24 223.654 218.768 171.977 1.00188.13 ATOM 231 N LYS n 25 222.022 219.498 168.400 1.00192.42 ATOM 232 CA LYS n 25 222.401 219.000 167.084 1.00192.42 ATOM 233 C LYS n 25 221.830 219.879 165.979 1.00192.42 ATOM 234 O LYS n 25 221.264 219.379 165.007 1.00192.42 ATOM 235 CB LYS n 25 221.928 217.556 166.902 1.00192.42 ATOM 236 CG LYS n 25 222.266 216.642 168.067 1.00192.42 ATOM 237 CD LYS n 25 223.770 216.476 168.220 1.00192.42 ATOM 238 CE LYS n 25 224.119 215.851 169.560 1.00192.42 ATOM 239 NZ LYS n 25 225.531 215.382 169.616 1.00192.42 TER