HEADER RIBOSOME 31-DEC-69 7SYW TITLE Structure of the wt IRES eIF5B-containing 48S initiation complex, TITLE 2 closed conformation. Structure 15(wt) COMPND MOL_ID: 37; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYW n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 198.532 213.842 194.154 1.00 40.77 ATOM 2 CA MET n 1 197.854 214.772 193.261 1.00 40.77 ATOM 3 C MET n 1 196.942 214.027 192.299 1.00 40.77 ATOM 4 O MET n 1 197.104 212.828 192.086 1.00 40.77 ATOM 5 CB MET n 1 198.873 215.609 192.487 1.00 40.77 ATOM 6 CG MET n 1 200.001 214.801 191.879 1.00 40.77 ATOM 7 SD MET n 1 201.359 215.831 191.299 1.00 40.77 ATOM 8 CE MET n 1 200.463 217.137 190.463 1.00 40.77 ATOM 9 N ARG n 2 195.980 214.739 191.722 1.00 39.57 ATOM 10 CA ARG n 2 195.056 214.129 190.782 1.00 39.57 ATOM 11 C ARG n 2 195.726 213.964 189.419 1.00 39.57 ATOM 12 O ARG n 2 196.773 214.550 189.139 1.00 39.57 ATOM 13 CB ARG n 2 193.771 214.954 190.685 1.00 39.57 ATOM 14 CG ARG n 2 193.785 216.084 189.679 1.00 39.57 ATOM 15 CD ARG n 2 192.542 216.940 189.849 1.00 39.57 ATOM 16 NE ARG n 2 192.028 217.436 188.578 1.00 39.57 ATOM 17 CZ ARG n 2 190.939 218.181 188.453 1.00 39.57 ATOM 18 NH1 ARG n 2 190.242 218.570 189.506 1.00 39.57 ATOM 19 NH2 ARG n 2 190.537 218.544 187.239 1.00 39.57 ATOM 20 N ALA n 3 195.103 213.142 188.569 1.00 37.57 ATOM 21 CA ALA n 3 195.775 212.656 187.365 1.00 37.57 ATOM 22 C ALA n 3 195.906 213.741 186.302 1.00 37.57 ATOM 23 O ALA n 3 196.861 213.728 185.514 1.00 37.57 ATOM 24 CB ALA n 3 195.025 211.448 186.808 1.00 37.57 ATOM 25 N LYS n 4 194.966 214.688 186.272 1.00 38.69 ATOM 26 CA LYS n 4 194.958 215.718 185.236 1.00 38.69 ATOM 27 C LYS n 4 196.141 216.669 185.382 1.00 38.69 ATOM 28 O LYS n 4 196.868 216.934 184.415 1.00 38.69 ATOM 29 CB LYS n 4 193.641 216.487 185.300 1.00 38.69 ATOM 30 CG LYS n 4 193.273 217.229 184.041 1.00 38.69 ATOM 31 CD LYS n 4 191.933 217.911 184.219 1.00 38.69 ATOM 32 CE LYS n 4 191.544 218.689 182.988 1.00 38.69 ATOM 33 NZ LYS n 4 190.336 219.521 183.228 1.00 38.69 ATOM 34 N TRP n 5 196.365 217.174 186.594 1.00 38.82 ATOM 35 CA TRP n 5 197.457 218.118 186.792 1.00 38.82 ATOM 36 C TRP n 5 198.807 217.420 186.817 1.00 38.82 ATOM 37 O TRP n 5 199.820 218.031 186.465 1.00 38.82 ATOM 38 CB TRP n 5 197.227 218.925 188.067 1.00 38.82 ATOM 39 CG TRP n 5 195.807 219.448 188.291 1.00 38.82 ATOM 40 CD1 TRP n 5 195.125 219.418 189.470 1.00 38.82 ATOM 41 CD2 TRP n 5 194.927 220.101 187.344 1.00 38.82 ATOM 42 NE1 TRP n 5 193.891 219.994 189.326 1.00 38.82 ATOM 43 CE2 TRP n 5 193.748 220.429 188.037 1.00 38.82 ATOM 44 CE3 TRP n 5 195.035 220.471 185.996 1.00 38.82 ATOM 45 CZ2 TRP n 5 192.678 221.071 187.424 1.00 38.82 ATOM 46 CZ3 TRP n 5 193.970 221.101 185.392 1.00 38.82 ATOM 47 CH2 TRP n 5 192.808 221.396 186.104 1.00 38.82 ATOM 48 N ARG n 6 198.835 216.143 187.204 1.00 39.31 ATOM 49 CA ARG n 6 200.048 215.345 187.053 1.00 39.31 ATOM 50 C ARG n 6 200.407 215.174 185.583 1.00 39.31 ATOM 51 O ARG n 6 201.583 215.255 185.207 1.00 39.31 ATOM 52 CB ARG n 6 199.857 213.984 187.722 1.00 39.31 ATOM 53 CG ARG n 6 201.030 213.039 187.572 1.00 39.31 ATOM 54 CD ARG n 6 200.563 211.597 187.594 1.00 39.31 ATOM 55 NE ARG n 6 199.534 211.375 188.602 1.00 39.31 ATOM 56 CZ ARG n 6 199.781 211.053 189.864 1.00 39.31 ATOM 57 NH1 ARG n 6 201.017 210.900 190.309 1.00 39.31 ATOM 58 NH2 ARG n 6 198.762 210.877 190.699 1.00 39.31 ATOM 59 N LYS n 7 199.398 214.965 184.735 1.00 38.30 ATOM 60 CA LYS n 7 199.643 214.820 183.305 1.00 38.30 ATOM 61 C LYS n 7 200.094 216.143 182.692 1.00 38.30 ATOM 62 O LYS n 7 200.964 216.164 181.813 1.00 38.30 ATOM 63 CB LYS n 7 198.380 214.279 182.633 1.00 38.30 ATOM 64 CG LYS n 7 198.243 214.486 181.139 1.00 38.30 ATOM 65 CD LYS n 7 197.257 213.449 180.608 1.00 38.30 ATOM 66 CE LYS n 7 196.633 213.847 179.286 1.00 38.30 ATOM 67 NZ LYS n 7 197.683 214.186 178.288 1.00 38.30 ATOM 68 N LYS n 8 199.539 217.260 183.179 1.00 38.89 ATOM 69 CA LYS n 8 200.004 218.583 182.756 1.00 38.89 ATOM 70 C LYS n 8 201.449 218.842 183.178 1.00 38.89 ATOM 71 O LYS n 8 202.245 219.387 182.398 1.00 38.89 ATOM 72 CB LYS n 8 199.092 219.667 183.329 1.00 38.89 ATOM 73 CG LYS n 8 199.413 221.070 182.843 1.00 38.89 ATOM 74 CD LYS n 8 198.317 222.046 183.228 1.00 38.89 ATOM 75 CE LYS n 8 198.542 223.401 182.584 1.00 38.89 ATOM 76 NZ LYS n 8 198.519 223.325 181.096 1.00 38.89 ATOM 77 N ARG n 9 201.802 218.460 184.410 1.00 40.90 ATOM 78 CA ARG n 9 203.169 218.616 184.900 1.00 40.90 ATOM 79 C ARG n 9 204.148 217.781 184.088 1.00 40.90 ATOM 80 O ARG n 9 205.256 218.233 183.770 1.00 40.90 ATOM 81 CB ARG n 9 203.239 218.212 186.370 1.00 40.90 ATOM 82 CG ARG n 9 204.195 219.023 187.212 1.00 40.90 ATOM 83 CD ARG n 9 204.015 218.675 188.676 1.00 40.90 ATOM 84 NE ARG n 9 204.341 217.276 188.926 1.00 40.90 ATOM 85 CZ ARG n 9 204.795 216.804 190.078 1.00 40.90 ATOM 86 NH1 ARG n 9 204.980 217.592 191.123 1.00 40.90 ATOM 87 NH2 ARG n 9 205.064 215.506 190.186 1.00 40.90 ATOM 88 N MET n 10 203.747 216.562 183.735 1.00 43.04 ATOM 89 CA MET n 10 204.626 215.687 182.973 1.00 43.04 ATOM 90 C MET n 10 204.734 216.150 181.524 1.00 43.04 ATOM 91 O MET n 10 205.784 215.978 180.893 1.00 43.04 ATOM 92 CB MET n 10 204.117 214.253 183.091 1.00 43.04 ATOM 93 CG MET n 10 204.977 213.189 182.464 1.00 43.04 ATOM 94 SD MET n 10 204.193 211.598 182.748 1.00 43.04 ATOM 95 CE MET n 10 204.491 211.392 184.504 1.00 43.04 ATOM 96 N ARG n 11 203.677 216.788 181.001 1.00 42.18 ATOM 97 CA ARG n 11 203.761 217.446 179.696 1.00 42.18 ATOM 98 C ARG n 11 204.763 218.594 179.715 1.00 42.18 ATOM 99 O ARG n 11 205.551 218.755 178.775 1.00 42.18 ATOM 100 CB ARG n 11 202.397 217.990 179.273 1.00 42.18 ATOM 101 CG ARG n 11 202.152 217.933 177.777 1.00 42.18 ATOM 102 CD ARG n 11 201.443 216.667 177.361 1.00 42.18 ATOM 103 NE ARG n 11 200.131 216.605 177.995 1.00 42.18 ATOM 104 CZ ARG n 11 199.057 217.244 177.549 1.00 42.18 ATOM 105 NH1 ARG n 11 199.083 217.941 176.424 1.00 42.18 ATOM 106 NH2 ARG n 11 197.929 217.191 178.251 1.00 42.18 ATOM 107 N ARG n 12 204.733 219.408 180.776 1.00 43.98 ATOM 108 CA ARG n 12 205.669 220.524 180.901 1.00 43.98 ATOM 109 C ARG n 12 207.107 220.032 181.032 1.00 43.98 ATOM 110 O ARG n 12 208.030 220.605 180.434 1.00 43.98 ATOM 111 CB ARG n 12 205.293 221.381 182.108 1.00 43.98 ATOM 112 CG ARG n 12 205.977 222.734 182.156 1.00 43.98 ATOM 113 CD ARG n 12 205.547 223.509 183.392 1.00 43.98 ATOM 114 NE ARG n 12 204.106 223.723 183.434 1.00 43.98 ATOM 115 CZ ARG n 12 203.429 224.046 184.528 1.00 43.98 ATOM 116 NH1 ARG n 12 204.035 224.209 185.692 1.00 43.98 ATOM 117 NH2 ARG n 12 202.112 224.205 184.452 1.00 43.98 ATOM 118 N LEU n 13 207.306 218.962 181.807 1.00 47.35 ATOM 119 CA LEU n 13 208.632 218.370 181.961 1.00 47.35 ATOM 120 C LEU n 13 209.132 217.787 180.642 1.00 47.35 ATOM 121 O LEU n 13 210.317 217.920 180.308 1.00 47.35 ATOM 122 CB LEU n 13 208.585 217.313 183.070 1.00 47.35 ATOM 123 CG LEU n 13 209.809 216.591 183.643 1.00 47.35 ATOM 124 CD1 LEU n 13 209.502 216.178 185.064 1.00 47.35 ATOM 125 CD2 LEU n 13 210.168 215.352 182.859 1.00 47.35 ATOM 126 N LYS n 14 208.238 217.158 179.870 1.00 47.28 ATOM 127 CA LYS n 14 208.620 216.615 178.569 1.00 47.28 ATOM 128 C LYS n 14 208.958 217.723 177.576 1.00 47.28 ATOM 129 O LYS n 14 209.872 217.571 176.758 1.00 47.28 ATOM 130 CB LYS n 14 207.500 215.728 178.027 1.00 47.28 ATOM 131 CG LYS n 14 207.890 214.900 176.812 1.00 47.28 ATOM 132 CD LYS n 14 206.674 214.284 176.136 1.00 47.28 ATOM 133 CE LYS n 14 205.825 213.493 177.118 1.00 47.28 ATOM 134 NZ LYS n 14 204.628 212.903 176.459 1.00 47.28 ATOM 135 N ARG n 15 208.232 218.846 177.633 1.00 45.79 ATOM 136 CA ARG n 15 208.550 219.985 176.774 1.00 45.79 ATOM 137 C ARG n 15 209.909 220.584 177.119 1.00 45.79 ATOM 138 O ARG n 15 210.686 220.934 176.220 1.00 45.79 ATOM 139 CB ARG n 15 207.461 221.052 176.881 1.00 45.79 ATOM 140 CG ARG n 15 207.533 222.115 175.798 1.00 45.79 ATOM 141 CD ARG n 15 206.727 223.344 176.174 1.00 45.79 ATOM 142 NE ARG n 15 205.413 222.995 176.699 1.00 45.79 ATOM 143 CZ ARG n 15 204.381 223.826 176.745 1.00 45.79 ATOM 144 NH1 ARG n 15 204.473 225.069 176.303 1.00 45.79 ATOM 145 NH2 ARG n 15 203.226 223.399 177.248 1.00 45.79 ATOM 146 N LYS n 16 210.215 220.699 178.416 1.00 51.10 ATOM 147 CA LYS n 16 211.523 221.203 178.833 1.00 51.10 ATOM 148 C LYS n 16 212.647 220.256 178.421 1.00 51.10 ATOM 149 O LYS n 16 213.713 220.701 177.976 1.00 51.10 ATOM 150 CB LYS n 16 211.541 221.428 180.344 1.00 51.10 ATOM 151 CG LYS n 16 212.802 222.106 180.855 1.00 51.10 ATOM 152 CD LYS n 16 212.579 222.717 182.227 1.00 51.10 ATOM 153 CE LYS n 16 212.906 221.725 183.328 1.00 51.10 ATOM 154 NZ LYS n 16 213.766 222.326 184.381 1.00 51.10 ATOM 155 N ARG n 17 212.415 218.946 178.549 1.00 52.98 ATOM 156 CA ARG n 17 213.404 217.953 178.137 1.00 52.98 ATOM 157 C ARG n 17 213.635 217.970 176.630 1.00 52.98 ATOM 158 O ARG n 17 214.778 217.854 176.170 1.00 52.98 ATOM 159 CB ARG n 17 212.956 216.570 178.605 1.00 52.98 ATOM 160 CG ARG n 17 214.075 215.631 178.991 1.00 52.98 ATOM 161 CD ARG n 17 213.605 214.660 180.053 1.00 52.98 ATOM 162 NE ARG n 17 212.486 213.855 179.585 1.00 52.98 ATOM 163 CZ ARG n 17 211.752 213.071 180.362 1.00 52.98 ATOM 164 NH1 ARG n 17 212.071 212.857 181.628 1.00 52.98 ATOM 165 NH2 ARG n 17 210.670 212.488 179.857 1.00 52.98 ATOM 166 N ARG n 18 212.561 218.120 175.848 1.00 59.31 ATOM 167 CA ARG n 18 212.690 218.198 174.396 1.00 59.31 ATOM 168 C ARG n 18 213.422 219.465 173.972 1.00 59.31 ATOM 169 O ARG n 18 214.247 219.431 173.050 1.00 59.31 ATOM 170 CB ARG n 18 211.307 218.132 173.749 1.00 59.31 ATOM 171 CG ARG n 18 211.311 218.214 172.235 1.00 59.31 ATOM 172 CD ARG n 18 209.899 218.165 171.686 1.00 59.31 ATOM 173 NE ARG n 18 209.125 219.339 172.068 1.00 59.31 ATOM 174 CZ ARG n 18 207.813 219.452 171.914 1.00 59.31 ATOM 175 NH1 ARG n 18 207.093 218.476 171.385 1.00 59.31 ATOM 176 NH2 ARG n 18 207.208 220.572 172.299 1.00 59.31 ATOM 177 N LYS n 19 213.145 220.587 174.647 1.00 69.51 ATOM 178 CA LYS n 19 213.861 221.828 174.364 1.00 69.51 ATOM 179 C LYS n 19 215.342 221.706 174.701 1.00 69.51 ATOM 180 O LYS n 19 216.196 222.182 173.944 1.00 69.51 ATOM 181 CB LYS n 19 213.224 222.985 175.136 1.00 69.51 ATOM 182 CG LYS n 19 213.825 224.360 174.853 1.00 69.51 ATOM 183 CD LYS n 19 214.671 224.857 176.020 1.00 69.51 ATOM 184 CE LYS n 19 213.814 225.171 177.233 1.00 69.51 ATOM 185 NZ LYS n 19 214.639 225.599 178.395 1.00 69.51 ATOM 186 N MET n 20 215.666 221.053 175.822 1.00 78.78 ATOM 187 CA MET n 20 217.064 220.899 176.216 1.00 78.78 ATOM 188 C MET n 20 217.807 219.967 175.262 1.00 78.78 ATOM 189 O MET n 20 218.975 220.206 174.931 1.00 78.78 ATOM 190 CB MET n 20 217.150 220.374 177.649 1.00 78.78 ATOM 191 CG MET n 20 218.450 220.679 178.401 1.00 78.78 ATOM 192 SD MET n 20 219.025 222.391 178.286 1.00 78.78 ATOM 193 CE MET n 20 220.382 222.282 177.120 1.00 78.78 ATOM 194 N ARG n 21 217.139 218.904 174.800 1.00 78.33 ATOM 195 CA ARG n 21 217.763 217.999 173.839 1.00 78.33 ATOM 196 C ARG n 21 217.951 218.667 172.481 1.00 78.33 ATOM 197 O ARG n 21 218.975 218.461 171.818 1.00 78.33 ATOM 198 CB ARG n 21 216.930 216.724 173.699 1.00 78.33 ATOM 199 CG ARG n 21 217.614 215.625 172.904 1.00 78.33 ATOM 200 CD ARG n 21 216.943 214.283 173.123 1.00 78.33 ATOM 201 NE ARG n 21 217.391 213.285 172.160 1.00 78.33 ATOM 202 CZ ARG n 21 216.755 212.150 171.908 1.00 78.33 ATOM 203 NH1 ARG n 21 215.631 211.834 172.531 1.00 78.33 ATOM 204 NH2 ARG n 21 217.258 211.310 171.008 1.00 78.33 ATOM 205 N GLN n 22 216.981 219.479 172.051 1.00 94.05 ATOM 206 CA GLN n 22 217.109 220.160 170.768 1.00 94.05 ATOM 207 C GLN n 22 218.051 221.356 170.833 1.00 94.05 ATOM 208 O GLN n 22 218.491 221.837 169.784 1.00 94.05 ATOM 209 CB GLN n 22 215.733 220.598 170.267 1.00 94.05 ATOM 210 CG GLN n 22 214.895 219.450 169.729 1.00 94.05 ATOM 211 CD GLN n 22 213.562 219.905 169.173 1.00 94.05 ATOM 212 OE1 GLN n 22 213.253 221.097 169.163 1.00 94.05 ATOM 213 NE2 GLN n 22 212.760 218.954 168.708 1.00 94.05 ATOM 214 N ARG n 23 218.357 221.858 172.029 1.00105.01 ATOM 215 CA ARG n 23 219.409 222.854 172.180 1.00105.01 ATOM 216 C ARG n 23 220.758 222.245 172.542 1.00105.01 ATOM 217 O ARG n 23 221.752 222.977 172.605 1.00105.01 ATOM 218 CB ARG n 23 219.016 223.893 173.238 1.00105.01 ATOM 219 CG ARG n 23 217.847 224.800 172.852 1.00105.01 ATOM 220 CD ARG n 23 218.245 225.879 171.845 1.00105.01 ATOM 221 NE ARG n 23 218.088 225.447 170.460 1.00105.01 ATOM 222 CZ ARG n 23 216.944 225.467 169.790 1.00105.01 ATOM 223 NH1 ARG n 23 215.826 225.911 170.342 1.00105.01 ATOM 224 NH2 ARG n 23 216.920 225.035 168.532 1.00105.01 ATOM 225 N SER n 24 220.821 220.933 172.778 1.00109.65 ATOM 226 CA SER n 24 222.075 220.238 173.042 1.00109.65 ATOM 227 C SER n 24 222.667 219.605 171.786 1.00109.65 ATOM 228 O SER n 24 223.326 218.563 171.870 1.00109.65 ATOM 229 CB SER n 24 221.878 219.174 174.121 1.00109.65 ATOM 230 OG SER n 24 221.675 219.762 175.391 1.00109.65 ATOM 231 N LYS n 25 222.440 220.209 170.623 1.00113.19 ATOM 232 CA LYS n 25 222.931 219.667 169.359 1.00113.19 ATOM 233 C LYS n 25 224.448 219.796 169.240 1.00113.19 ATOM 234 O LYS n 25 225.156 218.799 169.101 1.00113.19 ATOM 235 CB LYS n 25 222.256 220.370 168.179 1.00113.19 ATOM 236 CG LYS n 25 220.759 220.136 168.086 1.00113.19 ATOM 237 CD LYS n 25 220.433 218.671 167.844 1.00113.19 ATOM 238 CE LYS n 25 218.932 218.454 167.729 1.00113.19 ATOM 239 NZ LYS n 25 218.589 217.026 167.486 1.00113.19 TER