HEADER RIBOSOME 31-DEC-69 7SYX TITLE Structure of the delta dII IRES eIF5B-containing 48S initiation TITLE 2 complex, closed conformation. Structure 15(delta dII) COMPND MOL_ID: 37; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYX n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 198.052 216.139 194.327 1.00 18.36 ATOM 2 CA MET n 1 198.252 215.739 192.939 1.00 18.36 ATOM 3 C MET n 1 197.202 214.753 192.441 1.00 18.36 ATOM 4 O MET n 1 197.287 213.553 192.700 1.00 18.36 ATOM 5 CB MET n 1 199.646 215.135 192.756 1.00 18.36 ATOM 6 CG MET n 1 200.718 216.139 192.373 1.00 18.36 ATOM 7 SD MET n 1 200.385 216.829 190.740 1.00 18.36 ATOM 8 CE MET n 1 201.541 218.192 190.686 1.00 18.36 ATOM 9 N ARG n 2 196.206 215.274 191.728 1.00 20.68 ATOM 10 CA ARG n 2 195.289 214.445 190.965 1.00 20.68 ATOM 11 C ARG n 2 195.891 214.192 189.581 1.00 20.68 ATOM 12 O ARG n 2 196.985 214.666 189.264 1.00 20.68 ATOM 13 CB ARG n 2 193.905 215.096 190.918 1.00 20.68 ATOM 14 CG ARG n 2 193.737 216.202 189.895 1.00 20.68 ATOM 15 CD ARG n 2 192.469 217.004 190.151 1.00 20.68 ATOM 16 NE ARG n 2 191.759 217.329 188.920 1.00 20.68 ATOM 17 CZ ARG n 2 190.702 218.126 188.853 1.00 20.68 ATOM 18 NH1 ARG n 2 190.224 218.732 189.927 1.00 20.68 ATOM 19 NH2 ARG n 2 190.114 218.328 187.678 1.00 20.68 ATOM 20 N ALA n 3 195.178 213.424 188.749 1.00 18.70 ATOM 21 CA ALA n 3 195.768 212.907 187.515 1.00 18.70 ATOM 22 C ALA n 3 195.974 213.999 186.468 1.00 18.70 ATOM 23 O ALA n 3 196.961 213.968 185.722 1.00 18.70 ATOM 24 CB ALA n 3 194.896 211.785 186.952 1.00 18.70 ATOM 25 N LYS n 4 195.062 214.974 186.401 1.00 20.33 ATOM 26 CA LYS n 4 195.149 216.001 185.363 1.00 20.33 ATOM 27 C LYS n 4 196.308 216.961 185.613 1.00 20.33 ATOM 28 O LYS n 4 197.043 217.316 184.682 1.00 20.33 ATOM 29 CB LYS n 4 193.830 216.767 185.272 1.00 20.33 ATOM 30 CG LYS n 4 193.668 217.564 183.990 1.00 20.33 ATOM 31 CD LYS n 4 192.762 218.761 184.188 1.00 20.33 ATOM 32 CE LYS n 4 191.318 218.347 184.385 1.00 20.33 ATOM 33 NZ LYS n 4 190.438 219.535 184.552 1.00 20.33 ATOM 34 N TRP n 5 196.500 217.381 186.864 1.00 21.60 ATOM 35 CA TRP n 5 197.601 218.289 187.156 1.00 21.60 ATOM 36 C TRP n 5 198.941 217.565 187.141 1.00 21.60 ATOM 37 O TRP n 5 199.968 218.174 186.815 1.00 21.60 ATOM 38 CB TRP n 5 197.365 218.986 188.496 1.00 21.60 ATOM 39 CG TRP n 5 195.945 219.506 188.749 1.00 21.60 ATOM 40 CD1 TRP n 5 195.238 219.360 189.905 1.00 21.60 ATOM 41 CD2 TRP n 5 195.088 220.260 187.857 1.00 21.60 ATOM 42 NE1 TRP n 5 194.011 219.961 189.798 1.00 21.60 ATOM 43 CE2 TRP n 5 193.897 220.529 188.559 1.00 21.60 ATOM 44 CE3 TRP n 5 195.229 220.770 186.558 1.00 21.60 ATOM 45 CZ2 TRP n 5 192.843 221.245 187.997 1.00 21.60 ATOM 46 CZ3 TRP n 5 194.181 221.478 186.004 1.00 21.60 ATOM 47 CH2 TRP n 5 193.003 221.707 186.721 1.00 21.60 ATOM 48 N ARG n 6 198.944 216.267 187.464 1.00 17.66 ATOM 49 CA ARG n 6 200.131 215.444 187.254 1.00 17.66 ATOM 50 C ARG n 6 200.479 215.354 185.774 1.00 17.66 ATOM 51 O ARG n 6 201.658 215.400 185.403 1.00 17.66 ATOM 52 CB ARG n 6 199.911 214.046 187.829 1.00 17.66 ATOM 53 CG ARG n 6 201.187 213.270 188.095 1.00 17.66 ATOM 54 CD ARG n 6 200.879 211.878 188.622 1.00 17.66 ATOM 55 NE ARG n 6 199.935 211.903 189.732 1.00 17.66 ATOM 56 CZ ARG n 6 200.277 211.809 191.010 1.00 17.66 ATOM 57 NH1 ARG n 6 201.542 211.693 191.380 1.00 17.66 ATOM 58 NH2 ARG n 6 199.326 211.829 191.939 1.00 17.66 ATOM 59 N LYS n 7 199.459 215.236 184.917 1.00 19.55 ATOM 60 CA LYS n 7 199.678 215.229 183.473 1.00 19.55 ATOM 61 C LYS n 7 200.227 216.566 182.984 1.00 19.55 ATOM 62 O LYS n 7 201.098 216.601 182.108 1.00 19.55 ATOM 63 CB LYS n 7 198.373 214.891 182.753 1.00 19.55 ATOM 64 CG LYS n 7 198.337 213.503 182.139 1.00 19.55 ATOM 65 CD LYS n 7 196.983 213.221 181.508 1.00 19.55 ATOM 66 CE LYS n 7 196.743 214.101 180.295 1.00 19.55 ATOM 67 NZ LYS n 7 195.828 213.459 179.313 1.00 19.55 ATOM 68 N LYS n 8 199.730 217.674 183.543 1.00 20.68 ATOM 69 CA LYS n 8 200.237 218.996 183.168 1.00 20.68 ATOM 70 C LYS n 8 201.689 219.192 183.607 1.00 20.68 ATOM 71 O LYS n 8 202.505 219.746 182.855 1.00 20.68 ATOM 72 CB LYS n 8 199.347 220.088 183.763 1.00 20.68 ATOM 73 CG LYS n 8 199.706 221.495 183.309 1.00 20.68 ATOM 74 CD LYS n 8 198.857 222.543 184.010 1.00 20.68 ATOM 75 CE LYS n 8 197.704 222.998 183.132 1.00 20.68 ATOM 76 NZ LYS n 8 197.325 224.411 183.406 1.00 20.68 ATOM 77 N ARG n 9 202.025 218.743 184.821 1.00 21.31 ATOM 78 CA ARG n 9 203.402 218.819 185.306 1.00 21.31 ATOM 79 C ARG n 9 204.335 217.946 184.470 1.00 21.31 ATOM 80 O ARG n 9 205.459 218.355 184.143 1.00 21.31 ATOM 81 CB ARG n 9 203.447 218.410 186.780 1.00 21.31 ATOM 82 CG ARG n 9 204.833 218.132 187.335 1.00 21.31 ATOM 83 CD ARG n 9 204.747 217.545 188.729 1.00 21.31 ATOM 84 NE ARG n 9 205.124 218.516 189.748 1.00 21.31 ATOM 85 CZ ARG n 9 205.125 218.272 191.050 1.00 21.31 ATOM 86 NH1 ARG n 9 204.774 217.090 191.532 1.00 21.31 ATOM 87 NH2 ARG n 9 205.481 219.238 191.891 1.00 21.31 ATOM 88 N MET n 10 203.871 216.749 184.098 1.00 25.52 ATOM 89 CA MET n 10 204.651 215.865 183.239 1.00 25.52 ATOM 90 C MET n 10 204.834 216.462 181.848 1.00 25.52 ATOM 91 O MET n 10 205.893 216.300 181.233 1.00 25.52 ATOM 92 CB MET n 10 203.972 214.499 183.154 1.00 25.52 ATOM 93 CG MET n 10 204.834 213.415 182.545 1.00 25.52 ATOM 94 SD MET n 10 206.093 212.765 183.662 1.00 25.52 ATOM 95 CE MET n 10 205.202 212.713 185.216 1.00 25.52 ATOM 96 N ARG n 11 203.813 217.164 181.343 1.00 26.46 ATOM 97 CA ARG n 11 203.931 217.852 180.061 1.00 26.46 ATOM 98 C ARG n 11 204.961 218.973 180.119 1.00 26.46 ATOM 99 O ARG n 11 205.748 219.144 179.182 1.00 26.46 ATOM 100 CB ARG n 11 202.572 218.407 179.636 1.00 26.46 ATOM 101 CG ARG n 11 201.879 217.603 178.553 1.00 26.46 ATOM 102 CD ARG n 11 200.656 218.342 178.033 1.00 26.46 ATOM 103 NE ARG n 11 199.713 217.449 177.371 1.00 26.46 ATOM 104 CZ ARG n 11 198.800 216.723 178.002 1.00 26.46 ATOM 105 NH1 ARG n 11 198.676 216.760 179.318 1.00 26.46 ATOM 106 NH2 ARG n 11 197.990 215.942 177.294 1.00 26.46 ATOM 107 N ARG n 12 204.969 219.745 181.213 1.00 26.02 ATOM 108 CA ARG n 12 205.961 220.811 181.369 1.00 26.02 ATOM 109 C ARG n 12 207.377 220.249 181.475 1.00 26.02 ATOM 110 O ARG n 12 208.323 220.804 180.894 1.00 26.02 ATOM 111 CB ARG n 12 205.631 221.659 182.597 1.00 26.02 ATOM 112 CG ARG n 12 204.513 222.663 182.379 1.00 26.02 ATOM 113 CD ARG n 12 204.064 223.282 183.693 1.00 26.02 ATOM 114 NE ARG n 12 205.163 223.410 184.643 1.00 26.02 ATOM 115 CZ ARG n 12 205.097 224.094 185.777 1.00 26.02 ATOM 116 NH1 ARG n 12 203.994 224.730 186.137 1.00 26.02 ATOM 117 NH2 ARG n 12 206.164 224.141 186.569 1.00 26.02 ATOM 118 N LEU n 13 207.535 219.137 182.204 1.00 30.15 ATOM 119 CA LEU n 13 208.835 218.476 182.299 1.00 30.15 ATOM 120 C LEU n 13 209.279 217.932 180.943 1.00 30.15 ATOM 121 O LEU n 13 210.465 218.000 180.597 1.00 30.15 ATOM 122 CB LEU n 13 208.771 217.353 183.337 1.00 30.15 ATOM 123 CG LEU n 13 210.021 216.524 183.655 1.00 30.15 ATOM 124 CD1 LEU n 13 211.271 217.394 183.789 1.00 30.15 ATOM 125 CD2 LEU n 13 209.807 215.688 184.909 1.00 30.15 ATOM 126 N LYS n 14 208.333 217.398 180.161 1.00 30.43 ATOM 127 CA LYS n 14 208.648 216.905 178.823 1.00 30.43 ATOM 128 C LYS n 14 209.064 218.036 177.891 1.00 30.43 ATOM 129 O LYS n 14 209.974 217.864 177.074 1.00 30.43 ATOM 130 CB LYS n 14 207.449 216.153 178.247 1.00 30.43 ATOM 131 CG LYS n 14 207.828 215.033 177.295 1.00 30.43 ATOM 132 CD LYS n 14 206.604 214.300 176.779 1.00 30.43 ATOM 133 CE LYS n 14 206.908 213.582 175.476 1.00 30.43 ATOM 134 NZ LYS n 14 208.069 212.659 175.613 1.00 30.43 ATOM 135 N ARG n 15 208.405 219.197 177.999 1.00 32.15 ATOM 136 CA ARG n 15 208.802 220.364 177.211 1.00 32.15 ATOM 137 C ARG n 15 210.204 220.835 177.575 1.00 32.15 ATOM 138 O ARG n 15 211.000 221.179 176.692 1.00 32.15 ATOM 139 CB ARG n 15 207.807 221.511 177.394 1.00 32.15 ATOM 140 CG ARG n 15 206.409 221.267 176.844 1.00 32.15 ATOM 141 CD ARG n 15 205.522 222.544 176.807 1.00 32.15 ATOM 142 NE ARG n 15 206.169 223.844 176.602 1.00 32.15 ATOM 143 CZ ARG n 15 206.874 224.217 175.537 1.00 32.15 ATOM 144 NH1 ARG n 15 206.974 223.453 174.460 1.00 32.15 ATOM 145 NH2 ARG n 15 207.469 225.406 175.541 1.00 32.15 ATOM 146 N LYS n 16 210.525 220.858 178.875 1.00 32.65 ATOM 147 CA LYS n 16 211.857 221.295 179.294 1.00 32.65 ATOM 148 C LYS n 16 212.937 220.313 178.845 1.00 32.65 ATOM 149 O LYS n 16 214.017 220.729 178.400 1.00 32.65 ATOM 150 CB LYS n 16 211.899 221.486 180.810 1.00 32.65 ATOM 151 CG LYS n 16 212.684 222.718 181.243 1.00 32.65 ATOM 152 CD LYS n 16 212.758 222.842 182.756 1.00 32.65 ATOM 153 CE LYS n 16 213.755 221.856 183.342 1.00 32.65 ATOM 154 NZ LYS n 16 213.823 221.948 184.827 1.00 32.65 ATOM 155 N ARG n 17 212.655 219.007 178.931 1.00 36.92 ATOM 156 CA ARG n 17 213.619 218.008 178.475 1.00 36.92 ATOM 157 C ARG n 17 213.792 218.043 176.960 1.00 36.92 ATOM 158 O ARG n 17 214.912 217.888 176.457 1.00 36.92 ATOM 159 CB ARG n 17 213.202 216.615 178.945 1.00 36.92 ATOM 160 CG ARG n 17 213.393 216.403 180.438 1.00 36.92 ATOM 161 CD ARG n 17 212.929 215.030 180.889 1.00 36.92 ATOM 162 NE ARG n 17 211.488 214.862 180.761 1.00 36.92 ATOM 163 CZ ARG n 17 210.835 213.752 181.078 1.00 36.92 ATOM 164 NH1 ARG n 17 211.467 212.692 181.555 1.00 36.92 ATOM 165 NH2 ARG n 17 209.516 213.707 180.918 1.00 36.92 ATOM 166 N ARG n 18 212.702 218.268 176.218 1.00 43.27 ATOM 167 CA ARG n 18 212.796 218.398 174.766 1.00 43.27 ATOM 168 C ARG n 18 213.585 219.640 174.367 1.00 43.27 ATOM 169 O ARG n 18 214.386 219.594 173.425 1.00 43.27 ATOM 170 CB ARG n 18 211.395 218.430 174.153 1.00 43.27 ATOM 171 CG ARG n 18 211.381 218.466 172.633 1.00 43.27 ATOM 172 CD ARG n 18 209.973 218.323 172.079 1.00 43.27 ATOM 173 NE ARG n 18 209.107 219.427 172.475 1.00 43.27 ATOM 174 CZ ARG n 18 208.015 219.294 173.216 1.00 43.27 ATOM 175 NH1 ARG n 18 207.624 218.112 173.663 1.00 43.27 ATOM 176 NH2 ARG n 18 207.296 220.373 173.511 1.00 43.27 ATOM 177 N LYS n 19 213.388 220.750 175.088 1.00 58.72 ATOM 178 CA LYS n 19 214.115 221.978 174.783 1.00 58.72 ATOM 179 C LYS n 19 215.603 221.842 175.087 1.00 58.72 ATOM 180 O LYS n 19 216.444 222.287 174.294 1.00 58.72 ATOM 181 CB LYS n 19 213.512 223.151 175.555 1.00 58.72 ATOM 182 CG LYS n 19 214.052 224.510 175.135 1.00 58.72 ATOM 183 CD LYS n 19 213.202 225.647 175.682 1.00 58.72 ATOM 184 CE LYS n 19 211.759 225.546 175.210 1.00 58.72 ATOM 185 NZ LYS n 19 211.665 225.373 173.733 1.00 58.72 ATOM 186 N MET n 20 215.955 221.207 176.213 1.00 61.74 ATOM 187 CA MET n 20 217.374 221.032 176.517 1.00 61.74 ATOM 188 C MET n 20 218.017 219.998 175.594 1.00 61.74 ATOM 189 O MET n 20 219.211 220.098 175.285 1.00 61.74 ATOM 190 CB MET n 20 217.574 220.675 177.996 1.00 61.74 ATOM 191 CG MET n 20 217.103 219.298 178.444 1.00 61.74 ATOM 192 SD MET n 20 218.367 218.009 178.388 1.00 61.74 ATOM 193 CE MET n 20 219.077 218.158 180.024 1.00 61.74 ATOM 194 N ARG n 21 217.239 219.021 175.111 1.00 63.68 ATOM 195 CA ARG n 21 217.779 218.061 174.154 1.00 63.68 ATOM 196 C ARG n 21 218.009 218.702 172.790 1.00 63.68 ATOM 197 O ARG n 21 219.015 218.418 172.130 1.00 63.68 ATOM 198 CB ARG n 21 216.847 216.857 174.028 1.00 63.68 ATOM 199 CG ARG n 21 217.482 215.663 173.330 1.00 63.68 ATOM 200 CD ARG n 21 216.567 214.450 173.340 1.00 63.68 ATOM 201 NE ARG n 21 215.229 214.769 172.857 1.00 63.68 ATOM 202 CZ ARG n 21 214.761 214.422 171.665 1.00 63.68 ATOM 203 NH1 ARG n 21 215.503 213.748 170.801 1.00 63.68 ATOM 204 NH2 ARG n 21 213.519 214.760 171.332 1.00 63.68 ATOM 205 N GLN n 22 217.089 219.565 172.345 1.00 75.48 ATOM 206 CA GLN n 22 217.268 220.198 171.043 1.00 75.48 ATOM 207 C GLN n 22 218.297 221.322 171.097 1.00 75.48 ATOM 208 O GLN n 22 218.880 221.670 170.063 1.00 75.48 ATOM 209 CB GLN n 22 215.926 220.704 170.499 1.00 75.48 ATOM 210 CG GLN n 22 215.314 221.895 171.224 1.00 75.48 ATOM 211 CD GLN n 22 215.611 223.219 170.546 1.00 75.48 ATOM 212 OE1 GLN n 22 215.831 223.275 169.337 1.00 75.48 ATOM 213 NE2 GLN n 22 215.616 224.294 171.325 1.00 75.48 ATOM 214 N ARG n 23 218.539 221.905 172.275 1.00 79.67 ATOM 215 CA ARG n 23 219.621 222.874 172.391 1.00 79.67 ATOM 216 C ARG n 23 220.962 222.231 172.725 1.00 79.67 ATOM 217 O ARG n 23 221.994 222.900 172.611 1.00 79.67 ATOM 218 CB ARG n 23 219.285 223.938 173.442 1.00 79.67 ATOM 219 CG ARG n 23 219.625 223.549 174.871 1.00 79.67 ATOM 220 CD ARG n 23 219.779 224.777 175.753 1.00 79.67 ATOM 221 NE ARG n 23 218.555 225.566 175.825 1.00 79.67 ATOM 222 CZ ARG n 23 217.624 225.422 176.758 1.00 79.67 ATOM 223 NH1 ARG n 23 217.738 224.515 177.714 1.00 79.67 ATOM 224 NH2 ARG n 23 216.552 226.209 176.732 1.00 79.67 ATOM 225 N SER n 24 220.977 220.957 173.124 1.00 83.25 ATOM 226 CA SER n 24 222.213 220.246 173.425 1.00 83.25 ATOM 227 C SER n 24 222.550 219.196 172.370 1.00 83.25 ATOM 228 O SER n 24 223.124 218.153 172.700 1.00 83.25 ATOM 229 CB SER n 24 222.128 219.599 174.808 1.00 83.25 ATOM 230 OG SER n 24 222.139 220.579 175.831 1.00 83.25 ATOM 231 N LYS n 25 222.202 219.449 171.112 1.00 82.26 ATOM 232 CA LYS n 25 222.470 218.505 170.032 1.00 82.26 ATOM 233 C LYS n 25 223.954 218.477 169.675 1.00 82.26 ATOM 234 O LYS n 25 224.683 219.435 169.932 1.00 82.26 ATOM 235 CB LYS n 25 221.641 218.857 168.794 1.00 82.26 ATOM 236 CG LYS n 25 220.143 218.682 168.979 1.00 82.26 ATOM 237 CD LYS n 25 219.720 217.238 168.767 1.00 82.26 ATOM 238 CE LYS n 25 218.208 217.119 168.655 1.00 82.26 ATOM 239 NZ LYS n 25 217.790 215.785 168.143 1.00 82.26 TER