HEADER TRANSCRIPTION/DNA 31-DEC-69 7W5W TITLE Cryo-EM structure of SoxS-dependent transcription activation complex TITLE 2 with micF promoter DNA COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7W5W F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 159.031 141.401 113.240 1.00 71.69 ATOM 2 CA ARG F 448 158.302 140.202 112.883 1.00 71.69 ATOM 3 C ARG F 448 158.420 139.197 114.013 1.00 71.69 ATOM 4 O ARG F 448 159.371 139.235 114.796 1.00 71.69 ATOM 5 CB ARG F 448 158.825 139.636 111.561 1.00 71.69 ATOM 6 CG ARG F 448 157.886 138.656 110.874 1.00 71.69 ATOM 7 CD ARG F 448 156.508 139.244 110.677 1.00 71.69 ATOM 8 NE ARG F 448 156.452 140.136 109.528 1.00 71.69 ATOM 9 CZ ARG F 448 156.221 139.734 108.285 1.00 71.69 ATOM 10 NH1 ARG F 448 156.023 138.448 108.026 1.00 71.69 ATOM 11 NH2 ARG F 448 156.186 140.619 107.302 1.00 71.69 ATOM 12 N THR F 449 157.428 138.316 114.100 1.00 71.87 ATOM 13 CA THR F 449 157.392 137.300 115.143 1.00 71.87 ATOM 14 C THR F 449 158.480 136.250 114.951 1.00 71.87 ATOM 15 O THR F 449 159.157 135.867 115.910 1.00 71.87 ATOM 16 CB THR F 449 156.006 136.671 115.165 1.00 71.87 ATOM 17 OG1 THR F 449 156.061 135.400 115.818 1.00 71.87 ATOM 18 CG2 THR F 449 155.455 136.563 113.735 1.00 71.87 ATOM 19 N ILE F 450 158.641 135.757 113.731 1.00 66.89 ATOM 20 CA ILE F 450 159.716 134.849 113.360 1.00 66.89 ATOM 21 C ILE F 450 160.595 135.559 112.344 1.00 66.89 ATOM 22 O ILE F 450 160.084 136.178 111.402 1.00 66.89 ATOM 23 CB ILE F 450 159.150 133.533 112.795 1.00 66.89 ATOM 24 CG1 ILE F 450 157.993 133.039 113.666 1.00 66.89 ATOM 25 CG2 ILE F 450 160.234 132.484 112.688 1.00 66.89 ATOM 26 CD1 ILE F 450 157.466 131.684 113.276 1.00 66.89 ATOM 27 N ARG F 451 161.912 135.501 112.538 1.00 77.16 ATOM 28 CA ARG F 451 162.808 136.123 111.575 1.00 77.16 ATOM 29 C ARG F 451 162.795 135.339 110.276 1.00 77.16 ATOM 30 O ARG F 451 163.382 134.261 110.172 1.00 77.16 ATOM 31 CB ARG F 451 164.236 136.201 112.099 1.00 77.16 ATOM 32 CG ARG F 451 165.154 136.914 111.109 1.00 77.16 ATOM 33 CD ARG F 451 166.594 137.021 111.589 1.00 77.16 ATOM 34 NE ARG F 451 167.424 137.844 110.703 1.00 77.16 ATOM 35 CZ ARG F 451 168.142 137.383 109.682 1.00 77.16 ATOM 36 NH1 ARG F 451 168.147 136.091 109.400 1.00 77.16 ATOM 37 NH2 ARG F 451 168.861 138.218 108.944 1.00 77.16 ATOM 38 N ILE F 452 162.146 135.910 109.274 1.00 77.45 ATOM 39 CA ILE F 452 161.952 135.251 107.991 1.00 77.45 ATOM 40 C ILE F 452 163.009 135.810 107.052 1.00 77.45 ATOM 41 O ILE F 452 163.219 137.028 107.035 1.00 77.45 ATOM 42 CB ILE F 452 160.530 135.489 107.466 1.00 77.45 ATOM 43 CG1 ILE F 452 159.522 134.740 108.330 1.00 77.45 ATOM 44 CG2 ILE F 452 160.404 135.083 106.017 1.00 77.45 ATOM 45 CD1 ILE F 452 158.097 135.159 108.088 1.00 77.45 ATOM 46 N PRO F 453 163.726 134.973 106.307 1.00 76.03 ATOM 47 CA PRO F 453 164.775 135.482 105.421 1.00 76.03 ATOM 48 C PRO F 453 164.219 136.329 104.290 1.00 76.03 ATOM 49 O PRO F 453 163.081 136.168 103.845 1.00 76.03 ATOM 50 CB PRO F 453 165.429 134.209 104.884 1.00 76.03 ATOM 51 CG PRO F 453 165.120 133.174 105.909 1.00 76.03 ATOM 52 CD PRO F 453 163.756 133.508 106.408 1.00 76.03 ATOM 53 N VAL F 454 165.072 137.240 103.815 1.00 76.85 ATOM 54 CA VAL F 454 164.647 138.311 102.926 1.00 76.85 ATOM 55 C VAL F 454 164.340 137.789 101.528 1.00 76.85 ATOM 56 O VAL F 454 163.649 138.459 100.752 1.00 76.85 ATOM 57 CB VAL F 454 165.740 139.401 102.936 1.00 76.85 ATOM 58 CG1 VAL F 454 166.990 138.920 102.231 1.00 76.85 ATOM 59 CG2 VAL F 454 165.245 140.724 102.371 1.00 76.85 ATOM 60 N HIS F 455 164.814 136.587 101.199 1.00 82.16 ATOM 61 CA HIS F 455 164.426 135.931 99.960 1.00 82.16 ATOM 62 C HIS F 455 162.939 135.639 99.907 1.00 82.16 ATOM 63 O HIS F 455 162.329 135.791 98.846 1.00 82.16 ATOM 64 CB HIS F 455 165.198 134.628 99.793 1.00 82.16 ATOM 65 CG HIS F 455 165.443 134.251 98.368 1.00 82.16 ATOM 66 ND1 HIS F 455 164.432 134.182 97.434 1.00 82.16 ATOM 67 CD2 HIS F 455 166.581 133.917 97.716 1.00 82.16 ATOM 68 CE1 HIS F 455 164.938 133.825 96.268 1.00 82.16 ATOM 69 NE2 HIS F 455 166.240 133.657 96.412 1.00 82.16 ATOM 70 N MET F 456 162.343 135.246 101.030 1.00 87.69 ATOM 71 CA MET F 456 160.939 134.863 101.030 1.00 87.69 ATOM 72 C MET F 456 160.025 136.075 100.913 1.00 87.69 ATOM 73 O MET F 456 158.948 135.984 100.315 1.00 87.69 ATOM 74 CB MET F 456 160.614 134.076 102.298 1.00 87.69 ATOM 75 CG MET F 456 161.119 132.645 102.298 1.00 87.69 ATOM 76 SD MET F 456 160.450 131.663 100.947 1.00 87.69 ATOM 77 CE MET F 456 161.804 130.538 100.627 1.00 87.69 ATOM 78 N ILE F 457 160.446 137.215 101.465 1.00 83.52 ATOM 79 CA ILE F 457 159.568 138.375 101.562 1.00 83.52 ATOM 80 C ILE F 457 159.340 139.010 100.203 1.00 83.52 ATOM 81 O ILE F 457 158.206 139.376 99.867 1.00 83.52 ATOM 82 CB ILE F 457 160.154 139.367 102.580 1.00 83.52 ATOM 83 CG1 ILE F 457 160.019 138.790 103.986 1.00 83.52 ATOM 84 CG2 ILE F 457 159.484 140.718 102.501 1.00 83.52 ATOM 85 CD1 ILE F 457 158.615 138.351 104.336 1.00 83.52 ATOM 86 N GLU F 458 160.388 139.111 99.384 1.00 98.30 ATOM 87 CA GLU F 458 160.231 139.645 98.038 1.00 98.30 ATOM 88 C GLU F 458 159.360 138.755 97.166 1.00 98.30 ATOM 89 O GLU F 458 158.683 139.261 96.268 1.00 98.30 ATOM 90 CB GLU F 458 161.597 139.838 97.378 1.00 98.30 ATOM 91 CG GLU F 458 161.622 140.835 96.213 1.00 98.30 ATOM 92 CD GLU F 458 161.354 142.273 96.631 1.00 98.30 ATOM 93 OE1 GLU F 458 161.669 142.637 97.782 1.00 98.30 ATOM 94 OE2 GLU F 458 160.836 143.048 95.800 1.00 98.30 ATOM 95 N THR F 459 159.337 137.451 97.427 1.00 99.35 ATOM 96 CA THR F 459 158.407 136.592 96.715 1.00 99.35 ATOM 97 C THR F 459 156.969 136.849 97.131 1.00 99.35 ATOM 98 O THR F 459 156.065 136.743 96.295 1.00 99.35 ATOM 99 CB THR F 459 158.750 135.125 96.949 1.00 99.35 ATOM 100 OG1 THR F 459 158.595 134.821 98.338 1.00 99.35 ATOM 101 CG2 THR F 459 160.174 134.839 96.527 1.00 99.35 ATOM 102 N ILE F 460 156.749 137.188 98.404 1.00103.47 ATOM 103 CA ILE F 460 155.396 137.395 98.914 1.00103.47 ATOM 104 C ILE F 460 154.753 138.594 98.236 1.00103.47 ATOM 105 O ILE F 460 153.604 138.534 97.784 1.00103.47 ATOM 106 CB ILE F 460 155.429 137.558 100.444 1.00103.47 ATOM 107 CG1 ILE F 460 155.731 136.219 101.117 1.00103.47 ATOM 108 CG2 ILE F 460 154.129 138.131 100.972 1.00103.47 ATOM 109 CD1 ILE F 460 154.738 135.140 100.797 1.00103.47 ATOM 110 N ASN F 461 155.507 139.675 98.096 1.00109.32 ATOM 111 CA ASN F 461 154.998 140.822 97.367 1.00109.32 ATOM 112 C ASN F 461 154.937 140.580 95.869 1.00109.32 ATOM 113 O ASN F 461 154.147 141.237 95.186 1.00109.32 ATOM 114 CB ASN F 461 155.846 142.053 97.670 1.00109.32 ATOM 115 CG ASN F 461 155.491 142.673 98.991 1.00109.32 ATOM 116 OD1 ASN F 461 155.123 141.973 99.935 1.00109.32 ATOM 117 ND2 ASN F 461 155.598 143.993 99.072 1.00109.32 ATOM 118 N LYS F 462 155.738 139.658 95.336 1.00100.73 ATOM 119 CA LYS F 462 155.518 139.267 93.951 1.00100.73 ATOM 120 C LYS F 462 154.276 138.409 93.828 1.00100.73 ATOM 121 O LYS F 462 153.647 138.377 92.769 1.00100.73 ATOM 122 CB LYS F 462 156.732 138.535 93.393 1.00100.73 ATOM 123 CG LYS F 462 157.890 139.450 93.054 1.00100.73 ATOM 124 CD LYS F 462 157.525 140.445 91.967 1.00100.73 ATOM 125 CE LYS F 462 158.708 141.343 91.646 1.00100.73 ATOM 126 NZ LYS F 462 158.338 142.447 90.728 1.00100.73 ATOM 127 N LEU F 463 153.909 137.713 94.899 1.00102.55 ATOM 128 CA LEU F 463 152.657 136.972 94.902 1.00102.55 ATOM 129 C LEU F 463 151.479 137.907 95.146 1.00102.55 ATOM 130 O LEU F 463 150.508 137.925 94.378 1.00102.55 ATOM 131 CB LEU F 463 152.706 135.876 95.962 1.00102.55 ATOM 132 CG LEU F 463 151.498 134.950 96.023 1.00102.55 ATOM 133 CD1 LEU F 463 151.968 133.519 96.041 1.00102.55 ATOM 134 CD2 LEU F 463 150.672 135.247 97.258 1.00102.55 ATOM 135 N ASN F 464 151.554 138.704 96.215 1.00115.11 ATOM 136 CA ASN F 464 150.371 139.414 96.690 1.00115.11 ATOM 137 C ASN F 464 150.022 140.621 95.827 1.00115.11 ATOM 138 O ASN F 464 148.889 141.105 95.891 1.00115.11 ATOM 139 CB ASN F 464 150.554 139.816 98.147 1.00115.11 ATOM 140 CG ASN F 464 150.292 138.667 99.093 1.00115.11 ATOM 141 OD1 ASN F 464 151.197 137.916 99.437 1.00115.11 ATOM 142 ND2 ASN F 464 149.046 138.532 99.531 1.00115.11 ATOM 143 N ARG F 465 150.961 141.122 95.022 1.00121.35 ATOM 144 CA ARG F 465 150.589 142.134 94.040 1.00121.35 ATOM 145 C ARG F 465 149.775 141.526 92.909 1.00121.35 ATOM 146 O ARG F 465 148.728 142.064 92.533 1.00121.35 ATOM 147 CB ARG F 465 151.825 142.834 93.481 1.00121.35 ATOM 148 CG ARG F 465 152.167 144.124 94.186 1.00121.35 ATOM 149 CD ARG F 465 153.325 144.827 93.512 1.00121.35 ATOM 150 NE ARG F 465 154.464 143.935 93.324 1.00121.35 ATOM 151 CZ ARG F 465 155.699 144.204 93.736 1.00121.35 ATOM 152 NH1 ARG F 465 155.957 145.334 94.379 1.00121.35 ATOM 153 NH2 ARG F 465 156.677 143.338 93.518 1.00121.35 ATOM 154 N ILE F 466 150.228 140.399 92.360 1.00116.17 ATOM 155 CA ILE F 466 149.548 139.855 91.195 1.00116.17 ATOM 156 C ILE F 466 148.275 139.131 91.612 1.00116.17 ATOM 157 O ILE F 466 147.370 138.930 90.792 1.00116.17 ATOM 158 CB ILE F 466 150.514 138.956 90.405 1.00116.17 ATOM 159 CG1 ILE F 466 151.875 139.638 90.316 1.00116.17 ATOM 160 CG2 ILE F 466 150.025 138.756 88.983 1.00116.17 ATOM 161 CD1 ILE F 466 152.909 138.859 89.526 1.00116.17 ATOM 162 N SER F 467 148.160 138.763 92.891 1.00114.59 ATOM 163 CA SER F 467 146.902 138.206 93.376 1.00114.59 ATOM 164 C SER F 467 145.796 139.246 93.354 1.00114.59 ATOM 165 O SER F 467 144.636 138.908 93.101 1.00114.59 ATOM 166 CB SER F 467 147.052 137.678 94.792 1.00114.59 ATOM 167 OG SER F 467 147.412 138.737 95.647 1.00114.59 ATOM 168 N ARG F 468 146.131 140.509 93.621 1.00120.94 ATOM 169 CA ARG F 468 145.162 141.575 93.415 1.00120.94 ATOM 170 C ARG F 468 144.869 141.765 91.938 1.00120.94 ATOM 171 O ARG F 468 143.747 142.130 91.570 1.00120.94 ATOM 172 CB ARG F 468 145.670 142.886 94.007 1.00120.94 ATOM 173 CG ARG F 468 146.067 142.809 95.464 1.00120.94 ATOM 174 CD ARG F 468 146.253 144.193 96.063 1.00120.94 ATOM 175 NE ARG F 468 147.299 144.970 95.409 1.00120.94 ATOM 176 CZ ARG F 468 147.065 146.011 94.619 1.00120.94 ATOM 177 NH1 ARG F 468 145.821 146.380 94.371 1.00120.94 ATOM 178 NH2 ARG F 468 148.071 146.667 94.058 1.00120.94 ATOM 179 N GLN F 469 145.859 141.515 91.083 1.00130.18 ATOM 180 CA GLN F 469 145.646 141.656 89.652 1.00130.18 ATOM 181 C GLN F 469 144.772 140.537 89.113 1.00130.18 ATOM 182 O GLN F 469 143.919 140.775 88.255 1.00130.18 ATOM 183 CB GLN F 469 146.986 141.696 88.924 1.00130.18 ATOM 184 CG GLN F 469 147.874 142.830 89.378 1.00130.18 ATOM 185 CD GLN F 469 147.540 144.149 88.712 1.00130.18 ATOM 186 OE1 GLN F 469 146.606 144.245 87.916 1.00130.18 ATOM 187 NE2 GLN F 469 148.300 145.182 89.047 1.00130.18 ATOM 188 N MET F 470 144.947 139.316 89.617 1.00132.19 ATOM 189 CA MET F 470 144.095 138.214 89.194 1.00132.19 ATOM 190 C MET F 470 142.647 138.381 89.640 1.00132.19 ATOM 191 O MET F 470 141.753 137.817 89.002 1.00132.19 ATOM 192 CB MET F 470 144.655 136.888 89.705 1.00132.19 ATOM 193 CG MET F 470 145.958 136.490 89.041 1.00132.19 ATOM 194 SD MET F 470 145.784 136.326 87.254 1.00132.19 ATOM 195 CE MET F 470 147.491 136.132 86.743 1.00132.19 ATOM 196 N LEU F 471 142.391 139.149 90.699 1.00118.09 ATOM 197 CA LEU F 471 141.021 139.554 90.978 1.00118.09 ATOM 198 C LEU F 471 140.529 140.554 89.947 1.00118.09 ATOM 199 O LEU F 471 139.353 140.536 89.575 1.00118.09 ATOM 200 CB LEU F 471 140.919 140.146 92.380 1.00118.09 ATOM 201 CG LEU F 471 140.808 139.120 93.504 1.00118.09 ATOM 202 CD1 LEU F 471 141.202 139.728 94.834 1.00118.09 ATOM 203 CD2 LEU F 471 139.403 138.564 93.567 1.00118.09 ATOM 204 N GLN F 472 141.413 141.425 89.472 1.00128.30 ATOM 205 CA GLN F 472 141.041 142.377 88.433 1.00128.30 ATOM 206 C GLN F 472 140.919 141.695 87.074 1.00128.30 ATOM 207 O GLN F 472 139.925 141.891 86.365 1.00128.30 ATOM 208 CB GLN F 472 142.073 143.502 88.390 1.00128.30 ATOM 209 CG GLN F 472 142.069 144.337 87.130 1.00128.30 ATOM 210 CD GLN F 472 143.174 145.377 87.125 1.00128.30 ATOM 211 OE1 GLN F 472 143.861 145.564 88.131 1.00128.30 ATOM 212 NE2 GLN F 472 143.377 146.031 85.992 1.00128.30 ATOM 213 N GLU F 473 141.924 140.888 86.699 1.00133.46 ATOM 214 CA GLU F 473 142.006 140.330 85.346 1.00133.46 ATOM 215 C GLU F 473 140.886 139.333 85.082 1.00133.46 ATOM 216 O GLU F 473 140.083 139.511 84.160 1.00133.46 ATOM 217 CB GLU F 473 143.361 139.646 85.124 1.00133.46 ATOM 218 CG GLU F 473 144.602 140.530 85.146 1.00133.46 ATOM 219 CD GLU F 473 144.515 141.712 84.219 1.00133.46 ATOM 220 OE1 GLU F 473 144.816 142.835 84.668 1.00133.46 ATOM 221 OE2 GLU F 473 144.155 141.522 83.039 1.00133.46 ATOM 222 N MET F 474 140.827 138.267 85.878 1.00134.71 ATOM 223 CA MET F 474 139.794 137.259 85.682 1.00134.71 ATOM 224 C MET F 474 138.429 137.770 86.117 1.00134.71 ATOM 225 O MET F 474 137.398 137.293 85.631 1.00134.71 ATOM 226 CB MET F 474 140.147 135.985 86.449 1.00134.71 ATOM 227 CG MET F 474 141.279 135.177 85.842 1.00134.71 ATOM 228 SD MET F 474 141.815 133.836 86.923 1.00134.71 ATOM 229 CE MET F 474 140.382 132.766 86.885 1.00134.71 ATOM 230 N GLY F 475 138.396 138.728 87.036 1.00136.39 ATOM 231 CA GLY F 475 137.139 139.109 87.638 1.00136.39 ATOM 232 C GLY F 475 136.614 138.122 88.652 1.00136.39 ATOM 233 O GLY F 475 135.477 138.274 89.111 1.00136.39 ATOM 234 N ARG F 476 137.400 137.106 89.003 1.00128.96 ATOM 235 CA ARG F 476 137.024 136.094 89.972 1.00128.96 ATOM 236 C ARG F 476 138.210 135.873 90.898 1.00128.96 ATOM 237 O ARG F 476 139.279 136.464 90.716 1.00128.96 ATOM 238 CB ARG F 476 136.590 134.798 89.278 1.00128.96 ATOM 239 CG ARG F 476 135.270 134.923 88.527 1.00128.96 ATOM 240 CD ARG F 476 134.974 133.721 87.646 1.00128.96 ATOM 241 NE ARG F 476 135.792 133.678 86.439 1.00128.96 ATOM 242 CZ ARG F 476 136.769 132.802 86.233 1.00128.96 ATOM 243 NH1 ARG F 476 137.052 131.894 87.156 1.00128.96 ATOM 244 NH2 ARG F 476 137.459 132.830 85.104 1.00128.96 ATOM 245 N GLU F 477 138.020 135.025 91.903 1.00144.28 ATOM 246 CA GLU F 477 139.076 134.775 92.870 1.00144.28 ATOM 247 C GLU F 477 140.163 133.890 92.248 1.00144.28 ATOM 248 O GLU F 477 139.870 133.048 91.397 1.00144.28 ATOM 249 CB GLU F 477 138.479 134.139 94.127 1.00144.28 ATOM 250 CG GLU F 477 137.777 132.817 93.923 1.00144.28 ATOM 251 CD GLU F 477 138.704 131.644 94.137 1.00144.28 ATOM 252 OE1 GLU F 477 139.763 131.843 94.770 1.00144.28 ATOM 253 OE2 GLU F 477 138.382 130.533 93.670 1.00144.28 ATOM 254 N PRO F 478 141.428 134.069 92.636 1.00136.86 ATOM 255 CA PRO F 478 142.508 133.402 91.903 1.00136.86 ATOM 256 C PRO F 478 142.713 131.961 92.341 1.00136.86 ATOM 257 O PRO F 478 142.454 131.591 93.489 1.00136.86 ATOM 258 CB PRO F 478 143.730 134.256 92.243 1.00136.86 ATOM 259 CG PRO F 478 143.460 134.709 93.616 1.00136.86 ATOM 260 CD PRO F 478 141.966 134.900 93.727 1.00136.86 ATOM 261 N THR F 479 143.199 131.130 91.382 1.00141.31 ATOM 262 CA THR F 479 143.535 129.719 91.487 1.00141.31 ATOM 263 C THR F 479 145.045 129.518 91.428 1.00141.31 ATOM 264 O THR F 479 145.721 130.125 90.594 1.00141.31 ATOM 265 CB THR F 479 142.885 128.933 90.359 1.00141.31 ATOM 266 OG1 THR F 479 143.389 129.407 89.106 1.00141.31 ATOM 267 CG2 THR F 479 141.379 129.108 90.395 1.00141.31 TER