HEADER TRANSCRIPTION/DNA 31-DEC-69 7W5X TITLE Cryo-EM structure of SoxS-dependent transcription activation complex TITLE 2 with zwf promoter DNA COMPND MOL_ID: 6; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7W5X F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 159.810 138.166 112.653 1.00 22.69 ATOM 2 CA ARG F 448 159.226 136.837 112.631 1.00 22.69 ATOM 3 C ARG F 448 159.716 136.071 113.847 1.00 22.69 ATOM 4 O ARG F 448 160.848 136.257 114.296 1.00 22.69 ATOM 5 CB ARG F 448 159.594 136.079 111.353 1.00 22.69 ATOM 6 CG ARG F 448 158.721 136.397 110.163 1.00 22.69 ATOM 7 CD ARG F 448 158.187 135.135 109.527 1.00 22.69 ATOM 8 NE ARG F 448 157.340 135.434 108.380 1.00 22.69 ATOM 9 CZ ARG F 448 156.671 134.521 107.687 1.00 22.69 ATOM 10 NH1 ARG F 448 156.746 133.244 108.023 1.00 22.69 ATOM 11 NH2 ARG F 448 155.927 134.886 106.655 1.00 22.69 ATOM 12 N THR F 449 158.855 135.206 114.383 1.00 20.31 ATOM 13 CA THR F 449 159.265 134.376 115.510 1.00 20.31 ATOM 14 C THR F 449 160.196 133.267 115.045 1.00 20.31 ATOM 15 O THR F 449 161.352 133.186 115.472 1.00 20.31 ATOM 16 CB THR F 449 158.043 133.791 116.211 1.00 20.31 ATOM 17 OG1 THR F 449 157.077 134.823 116.431 1.00 20.31 ATOM 18 CG2 THR F 449 158.444 133.199 117.543 1.00 20.31 ATOM 19 N ILE F 450 159.708 132.407 114.160 1.00 21.65 ATOM 20 CA ILE F 450 160.532 131.385 113.531 1.00 21.65 ATOM 21 C ILE F 450 161.172 132.031 112.309 1.00 21.65 ATOM 22 O ILE F 450 160.486 132.348 111.337 1.00 21.65 ATOM 23 CB ILE F 450 159.704 130.154 113.154 1.00 21.65 ATOM 24 CG1 ILE F 450 158.721 129.818 114.270 1.00 21.65 ATOM 25 CG2 ILE F 450 160.600 128.980 112.922 1.00 21.65 ATOM 26 CD1 ILE F 450 157.712 128.775 113.893 1.00 21.65 ATOM 27 N ARG F 451 162.485 132.237 112.363 1.00 24.24 ATOM 28 CA ARG F 451 163.171 133.076 111.389 1.00 24.24 ATOM 29 C ARG F 451 163.335 132.341 110.067 1.00 24.24 ATOM 30 O ARG F 451 163.900 131.246 110.021 1.00 24.24 ATOM 31 CB ARG F 451 164.530 133.512 111.921 1.00 24.24 ATOM 32 CG ARG F 451 165.167 134.621 111.109 1.00 24.24 ATOM 33 CD ARG F 451 166.671 134.547 111.145 1.00 24.24 ATOM 34 NE ARG F 451 167.173 133.548 110.216 1.00 24.24 ATOM 35 CZ ARG F 451 168.272 132.836 110.417 1.00 24.24 ATOM 36 NH1 ARG F 451 168.981 133.009 111.522 1.00 24.24 ATOM 37 NH2 ARG F 451 168.657 131.944 109.518 1.00 24.24 ATOM 38 N ILE F 452 162.854 132.957 108.999 1.00 26.13 ATOM 39 CA ILE F 452 162.970 132.429 107.644 1.00 26.13 ATOM 40 C ILE F 452 164.111 133.167 106.952 1.00 26.13 ATOM 41 O ILE F 452 164.177 134.400 107.052 1.00 26.13 ATOM 42 CB ILE F 452 161.655 132.613 106.867 1.00 26.13 ATOM 43 CG1 ILE F 452 160.451 132.271 107.742 1.00 26.13 ATOM 44 CG2 ILE F 452 161.647 131.786 105.621 1.00 26.13 ATOM 45 CD1 ILE F 452 160.290 130.814 108.021 1.00 26.13 ATOM 46 N PRO F 453 165.021 132.473 106.270 1.00 30.60 ATOM 47 CA PRO F 453 166.115 133.161 105.577 1.00 30.60 ATOM 48 C PRO F 453 165.620 133.992 104.404 1.00 30.60 ATOM 49 O PRO F 453 164.504 133.824 103.912 1.00 30.60 ATOM 50 CB PRO F 453 167.007 132.014 105.100 1.00 30.60 ATOM 51 CG PRO F 453 166.686 130.899 105.997 1.00 30.60 ATOM 52 CD PRO F 453 165.232 131.020 106.284 1.00 30.60 ATOM 53 N VAL F 454 166.489 134.900 103.950 1.00 37.48 ATOM 54 CA VAL F 454 166.070 135.923 102.999 1.00 37.48 ATOM 55 C VAL F 454 165.830 135.358 101.606 1.00 37.48 ATOM 56 O VAL F 454 165.176 136.012 100.787 1.00 37.48 ATOM 57 CB VAL F 454 167.102 137.065 102.943 1.00 37.48 ATOM 58 CG1 VAL F 454 167.364 137.603 104.329 1.00 37.48 ATOM 59 CG2 VAL F 454 168.394 136.599 102.303 1.00 37.48 ATOM 60 N HIS F 455 166.331 134.158 101.311 1.00 43.33 ATOM 61 CA HIS F 455 166.068 133.554 100.013 1.00 43.33 ATOM 62 C HIS F 455 164.688 132.926 99.946 1.00 43.33 ATOM 63 O HIS F 455 164.118 132.812 98.856 1.00 43.33 ATOM 64 CB HIS F 455 167.136 132.516 99.686 1.00 43.33 ATOM 65 CG HIS F 455 168.359 133.096 99.050 1.00 43.33 ATOM 66 ND1 HIS F 455 169.506 132.364 98.836 1.00 43.33 ATOM 67 CD2 HIS F 455 168.608 134.335 98.564 1.00 43.33 ATOM 68 CE1 HIS F 455 170.412 133.129 98.253 1.00 43.33 ATOM 69 NE2 HIS F 455 169.892 134.331 98.078 1.00 43.33 ATOM 70 N MET F 456 164.140 132.508 101.082 1.00 37.38 ATOM 71 CA MET F 456 162.796 131.954 101.112 1.00 37.38 ATOM 72 C MET F 456 161.742 133.038 101.289 1.00 37.38 ATOM 73 O MET F 456 160.618 132.886 100.798 1.00 37.38 ATOM 74 CB MET F 456 162.702 130.900 102.219 1.00 37.38 ATOM 75 CG MET F 456 161.397 130.116 102.284 1.00 37.38 ATOM 76 SD MET F 456 161.140 128.991 100.909 1.00 37.38 ATOM 77 CE MET F 456 162.447 127.808 101.200 1.00 37.38 ATOM 78 N ILE F 457 162.090 134.140 101.959 1.00 37.86 ATOM 79 CA ILE F 457 161.203 135.300 102.023 1.00 37.86 ATOM 80 C ILE F 457 161.026 135.905 100.635 1.00 37.86 ATOM 81 O ILE F 457 159.924 136.320 100.258 1.00 37.86 ATOM 82 CB ILE F 457 161.748 136.324 103.038 1.00 37.86 ATOM 83 CG1 ILE F 457 161.681 135.751 104.446 1.00 37.86 ATOM 84 CG2 ILE F 457 160.965 137.619 103.015 1.00 37.86 ATOM 85 CD1 ILE F 457 160.275 135.444 104.891 1.00 37.86 ATOM 86 N GLU F 458 162.097 135.915 99.835 1.00 45.05 ATOM 87 CA GLU F 458 162.012 136.399 98.461 1.00 45.05 ATOM 88 C GLU F 458 161.160 135.491 97.584 1.00 45.05 ATOM 89 O GLU F 458 160.556 135.963 96.617 1.00 45.05 ATOM 90 CB GLU F 458 163.409 136.530 97.863 1.00 45.05 ATOM 91 CG GLU F 458 164.117 137.829 98.206 1.00 45.05 ATOM 92 CD GLU F 458 165.376 138.039 97.386 1.00 45.05 ATOM 93 OE1 GLU F 458 166.330 138.659 97.901 1.00 45.05 ATOM 94 OE2 GLU F 458 165.412 137.585 96.223 1.00 45.05 ATOM 95 N THR F 459 161.098 134.198 97.900 1.00 39.80 ATOM 96 CA THR F 459 160.258 133.278 97.143 1.00 39.80 ATOM 97 C THR F 459 158.815 133.320 97.628 1.00 39.80 ATOM 98 O THR F 459 157.889 133.168 96.825 1.00 39.80 ATOM 99 CB THR F 459 160.828 131.862 97.245 1.00 39.80 ATOM 100 OG1 THR F 459 162.216 131.890 96.899 1.00 39.80 ATOM 101 CG2 THR F 459 160.128 130.911 96.297 1.00 39.80 ATOM 102 N ILE F 460 158.608 133.553 98.925 1.00 37.29 ATOM 103 CA ILE F 460 157.258 133.679 99.464 1.00 37.29 ATOM 104 C ILE F 460 156.605 134.963 98.967 1.00 37.29 ATOM 105 O ILE F 460 155.433 134.964 98.569 1.00 37.29 ATOM 106 CB ILE F 460 157.304 133.594 101.002 1.00 37.29 ATOM 107 CG1 ILE F 460 157.461 132.140 101.436 1.00 37.29 ATOM 108 CG2 ILE F 460 156.062 134.176 101.647 1.00 37.29 ATOM 109 CD1 ILE F 460 157.712 131.973 102.901 1.00 37.29 ATOM 110 N ASN F 461 157.363 136.064 98.933 1.00 39.69 ATOM 111 CA ASN F 461 156.852 137.313 98.375 1.00 39.69 ATOM 112 C ASN F 461 156.632 137.220 96.871 1.00 39.69 ATOM 113 O ASN F 461 155.787 137.937 96.329 1.00 39.69 ATOM 114 CB ASN F 461 157.808 138.464 98.680 1.00 39.69 ATOM 115 CG ASN F 461 157.929 138.745 100.156 1.00 39.69 ATOM 116 OD1 ASN F 461 158.966 139.208 100.626 1.00 39.69 ATOM 117 ND2 ASN F 461 156.870 138.460 100.900 1.00 39.69 ATOM 118 N LYS F 462 157.383 136.360 96.181 1.00 41.93 ATOM 119 CA LYS F 462 157.149 136.151 94.758 1.00 41.93 ATOM 120 C LYS F 462 155.843 135.411 94.512 1.00 41.93 ATOM 121 O LYS F 462 155.192 135.630 93.485 1.00 41.93 ATOM 122 CB LYS F 462 158.315 135.381 94.145 1.00 41.93 ATOM 123 CG LYS F 462 158.385 135.440 92.632 1.00 41.93 ATOM 124 CD LYS F 462 159.614 134.722 92.120 1.00 41.93 ATOM 125 CE LYS F 462 159.862 135.039 90.661 1.00 41.93 ATOM 126 NZ LYS F 462 161.220 134.615 90.227 1.00 41.93 ATOM 127 N LEU F 463 155.442 134.538 95.437 1.00 42.39 ATOM 128 CA LEU F 463 154.160 133.857 95.302 1.00 42.39 ATOM 129 C LEU F 463 152.990 134.785 95.589 1.00 42.39 ATOM 130 O LEU F 463 151.905 134.593 95.037 1.00 42.39 ATOM 131 CB LEU F 463 154.094 132.652 96.236 1.00 42.39 ATOM 132 CG LEU F 463 154.436 131.279 95.668 1.00 42.39 ATOM 133 CD1 LEU F 463 154.001 130.210 96.640 1.00 42.39 ATOM 134 CD2 LEU F 463 153.763 131.079 94.335 1.00 42.39 ATOM 135 N ASN F 464 153.180 135.783 96.448 1.00 41.28 ATOM 136 CA ASN F 464 152.088 136.677 96.799 1.00 41.28 ATOM 137 C ASN F 464 151.889 137.805 95.794 1.00 41.28 ATOM 138 O ASN F 464 150.838 138.451 95.824 1.00 41.28 ATOM 139 CB ASN F 464 152.312 137.256 98.197 1.00 41.28 ATOM 140 CG ASN F 464 152.065 136.238 99.294 1.00 41.28 ATOM 141 OD1 ASN F 464 151.267 135.317 99.131 1.00 41.28 ATOM 142 ND2 ASN F 464 152.748 136.400 100.418 1.00 41.28 ATOM 143 N ARG F 465 152.861 138.066 94.920 1.00 46.26 ATOM 144 CA ARG F 465 152.652 138.993 93.816 1.00 46.26 ATOM 145 C ARG F 465 152.109 138.309 92.577 1.00 46.26 ATOM 146 O ARG F 465 151.529 138.980 91.717 1.00 46.26 ATOM 147 CB ARG F 465 153.950 139.695 93.429 1.00 46.26 ATOM 148 CG ARG F 465 154.642 140.458 94.530 1.00 46.26 ATOM 149 CD ARG F 465 155.841 141.229 93.984 1.00 46.26 ATOM 150 NE ARG F 465 156.879 140.370 93.409 1.00 46.26 ATOM 151 CZ ARG F 465 157.097 140.219 92.105 1.00 46.26 ATOM 152 NH1 ARG F 465 156.334 140.854 91.228 1.00 46.26 ATOM 153 NH2 ARG F 465 158.067 139.424 91.678 1.00 46.26 ATOM 154 N ILE F 466 152.305 137.002 92.456 1.00 47.81 ATOM 155 CA ILE F 466 151.814 136.269 91.301 1.00 47.81 ATOM 156 C ILE F 466 150.409 135.725 91.550 1.00 47.81 ATOM 157 O ILE F 466 149.576 135.729 90.637 1.00 47.81 ATOM 158 CB ILE F 466 152.836 135.171 90.947 1.00 47.81 ATOM 159 CG1 ILE F 466 154.056 135.824 90.296 1.00 47.81 ATOM 160 CG2 ILE F 466 152.262 134.091 90.040 1.00 47.81 ATOM 161 CD1 ILE F 466 155.171 134.877 89.968 1.00 47.81 ATOM 162 N SER F 467 150.094 135.342 92.793 1.00 49.31 ATOM 163 CA SER F 467 148.727 134.963 93.139 1.00 49.31 ATOM 164 C SER F 467 147.761 136.138 93.075 1.00 49.31 ATOM 165 O SER F 467 146.556 135.918 92.920 1.00 49.31 ATOM 166 CB SER F 467 148.672 134.343 94.534 1.00 49.31 ATOM 167 OG SER F 467 149.446 133.162 94.600 1.00 49.31 ATOM 168 N ARG F 468 148.253 137.373 93.194 1.00 52.24 ATOM 169 CA ARG F 468 147.401 138.525 92.920 1.00 52.24 ATOM 170 C ARG F 468 147.180 138.698 91.423 1.00 52.24 ATOM 171 O ARG F 468 146.121 139.170 90.996 1.00 52.24 ATOM 172 CB ARG F 468 148.005 139.791 93.518 1.00 52.24 ATOM 173 CG ARG F 468 147.031 140.946 93.598 1.00 52.24 ATOM 174 CD ARG F 468 147.741 142.259 93.826 1.00 52.24 ATOM 175 NE ARG F 468 148.474 142.697 92.644 1.00 52.24 ATOM 176 CZ ARG F 468 149.034 143.894 92.517 1.00 52.24 ATOM 177 NH1 ARG F 468 148.944 144.779 93.500 1.00 52.24 ATOM 178 NH2 ARG F 468 149.684 144.208 91.406 1.00 52.24 ATOM 179 N GLN F 469 148.167 138.324 90.607 1.00 54.83 ATOM 180 CA GLN F 469 147.974 138.387 89.163 1.00 54.83 ATOM 181 C GLN F 469 147.025 137.303 88.674 1.00 54.83 ATOM 182 O GLN F 469 146.303 137.515 87.697 1.00 54.83 ATOM 183 CB GLN F 469 149.315 138.286 88.439 1.00 54.83 ATOM 184 CG GLN F 469 150.216 139.490 88.642 1.00 54.83 ATOM 185 CD GLN F 469 151.482 139.415 87.816 1.00 54.83 ATOM 186 OE1 GLN F 469 151.593 138.600 86.901 1.00 54.83 ATOM 187 NE2 GLN F 469 152.447 140.267 88.136 1.00 54.83 ATOM 188 N MET F 470 147.004 136.144 89.332 1.00 58.65 ATOM 189 CA MET F 470 146.002 135.138 89.004 1.00 58.65 ATOM 190 C MET F 470 144.615 135.518 89.503 1.00 58.65 ATOM 191 O MET F 470 143.621 135.028 88.960 1.00 58.65 ATOM 192 CB MET F 470 146.395 133.776 89.577 1.00 58.65 ATOM 193 CG MET F 470 147.821 133.340 89.278 1.00 58.65 ATOM 194 SD MET F 470 148.137 132.883 87.563 1.00 58.65 ATOM 195 CE MET F 470 147.557 131.189 87.548 1.00 58.65 ATOM 196 N LEU F 471 144.524 136.375 90.522 1.00 55.22 ATOM 197 CA LEU F 471 143.240 136.905 90.960 1.00 55.22 ATOM 198 C LEU F 471 142.720 138.002 90.044 1.00 55.22 ATOM 199 O LEU F 471 141.538 138.347 90.114 1.00 55.22 ATOM 200 CB LEU F 471 143.351 137.457 92.379 1.00 55.22 ATOM 201 CG LEU F 471 142.873 136.562 93.514 1.00 55.22 ATOM 202 CD1 LEU F 471 143.001 137.307 94.814 1.00 55.22 ATOM 203 CD2 LEU F 471 141.442 136.150 93.281 1.00 55.22 ATOM 204 N GLN F 472 143.585 138.568 89.208 1.00 60.91 ATOM 205 CA GLN F 472 143.176 139.602 88.269 1.00 60.91 ATOM 206 C GLN F 472 142.541 138.991 87.026 1.00 60.91 ATOM 207 O GLN F 472 141.439 139.377 86.623 1.00 60.91 ATOM 208 CB GLN F 472 144.388 140.464 87.904 1.00 60.91 ATOM 209 CG GLN F 472 144.252 141.243 86.615 1.00 60.91 ATOM 210 CD GLN F 472 145.590 141.554 85.974 1.00 60.91 ATOM 211 OE1 GLN F 472 146.482 142.108 86.613 1.00 60.91 ATOM 212 NE2 GLN F 472 145.734 141.198 84.704 1.00 60.91 ATOM 213 N GLU F 473 143.224 138.024 86.413 1.00 64.22 ATOM 214 CA GLU F 473 142.767 137.454 85.151 1.00 64.22 ATOM 215 C GLU F 473 141.638 136.452 85.362 1.00 64.22 ATOM 216 O GLU F 473 140.569 136.564 84.753 1.00 64.22 ATOM 217 CB GLU F 473 143.939 136.787 84.428 1.00 64.22 ATOM 218 CG GLU F 473 145.260 137.521 84.567 1.00 64.22 ATOM 219 CD GLU F 473 146.409 136.778 83.906 1.00 64.22 ATOM 220 OE1 GLU F 473 146.190 135.650 83.417 1.00 64.22 ATOM 221 OE2 GLU F 473 147.531 137.324 83.873 1.00 64.22 ATOM 222 N MET F 474 141.866 135.462 86.224 1.00 64.31 ATOM 223 CA MET F 474 140.917 134.366 86.379 1.00 64.31 ATOM 224 C MET F 474 139.698 134.791 87.186 1.00 64.31 ATOM 225 O MET F 474 138.575 134.364 86.897 1.00 64.31 ATOM 226 CB MET F 474 141.617 133.180 87.042 1.00 64.31 ATOM 227 CG MET F 474 140.776 131.932 87.198 1.00 64.31 ATOM 228 SD MET F 474 141.549 130.766 88.333 1.00 64.31 ATOM 229 CE MET F 474 143.238 130.763 87.737 1.00 64.31 ATOM 230 N GLY F 475 139.894 135.635 88.192 1.00 55.77 ATOM 231 CA GLY F 475 138.823 135.965 89.103 1.00 55.77 ATOM 232 C GLY F 475 138.610 134.962 90.210 1.00 55.77 ATOM 233 O GLY F 475 137.658 135.108 90.984 1.00 55.77 ATOM 234 N ARG F 476 139.458 133.941 90.306 1.00 63.15 ATOM 235 CA ARG F 476 139.401 132.955 91.372 1.00 63.15 ATOM 236 C ARG F 476 140.780 132.819 92.000 1.00 63.15 ATOM 237 O ARG F 476 141.768 133.373 91.512 1.00 63.15 ATOM 238 CB ARG F 476 138.929 131.589 90.860 1.00 63.15 ATOM 239 CG ARG F 476 137.600 131.603 90.137 1.00 63.15 ATOM 240 CD ARG F 476 137.140 130.196 89.805 1.00 63.15 ATOM 241 NE ARG F 476 137.901 129.596 88.714 1.00 63.15 ATOM 242 CZ ARG F 476 138.839 128.669 88.876 1.00 63.15 ATOM 243 NH1 ARG F 476 139.146 128.239 90.092 1.00 63.15 ATOM 244 NH2 ARG F 476 139.478 128.178 87.823 1.00 63.15 ATOM 245 N GLU F 477 140.841 132.069 93.090 1.00 65.85 ATOM 246 CA GLU F 477 142.124 131.777 93.714 1.00 65.85 ATOM 247 C GLU F 477 142.861 130.734 92.882 1.00 65.85 ATOM 248 O GLU F 477 142.239 129.775 92.411 1.00 65.85 ATOM 249 CB GLU F 477 141.922 131.282 95.145 1.00 65.85 ATOM 250 CG GLU F 477 143.200 130.899 95.881 1.00 65.85 ATOM 251 CD GLU F 477 144.129 132.075 96.113 1.00 65.85 ATOM 252 OE1 GLU F 477 145.304 131.998 95.700 1.00 65.85 ATOM 253 OE2 GLU F 477 143.686 133.078 96.713 1.00 65.85 ATOM 254 N PRO F 478 144.164 130.890 92.662 1.00 63.50 ATOM 255 CA PRO F 478 144.887 129.912 91.843 1.00 63.50 ATOM 256 C PRO F 478 145.151 128.622 92.603 1.00 63.50 ATOM 257 O PRO F 478 145.508 128.631 93.783 1.00 63.50 ATOM 258 CB PRO F 478 146.192 130.633 91.502 1.00 63.50 ATOM 259 N THR F 479 144.955 127.507 91.907 1.00 64.44 ATOM 260 CA THR F 479 145.292 126.201 92.445 1.00 64.44 ATOM 261 C THR F 479 146.811 126.021 92.412 1.00 64.44 ATOM 262 O THR F 479 147.468 126.482 91.478 1.00 64.44 ATOM 263 CB THR F 479 144.594 125.113 91.623 1.00 64.44 ATOM 264 OG1 THR F 479 143.180 125.340 91.645 1.00 64.44 ATOM 265 CG2 THR F 479 144.865 123.712 92.158 1.00 64.44 TER