HEADER TRANSCRIPTION/DNA 31-DEC-69 7W5Y TITLE Cryo-EM structure of SoxS-dependent transcription activation complex TITLE 2 with fpr promoter DNA COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7W5Y F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 171.568 150.859 124.033 1.00 82.31 ATOM 2 CA ARG F 448 170.979 149.538 123.887 1.00 82.31 ATOM 3 C ARG F 448 171.260 148.772 125.164 1.00 82.31 ATOM 4 O ARG F 448 172.383 148.816 125.677 1.00 82.31 ATOM 5 CB ARG F 448 171.542 148.784 122.679 1.00 82.31 ATOM 6 CG ARG F 448 171.101 149.306 121.313 1.00 82.31 ATOM 7 CD ARG F 448 169.713 148.830 120.928 1.00 82.31 ATOM 8 NE ARG F 448 169.628 148.484 119.509 1.00 82.31 ATOM 9 CZ ARG F 448 168.556 147.950 118.924 1.00 82.31 ATOM 10 NH1 ARG F 448 167.462 147.692 119.631 1.00 82.31 ATOM 11 NH2 ARG F 448 168.580 147.665 117.631 1.00 82.31 ATOM 12 N THR F 449 170.219 148.124 125.694 1.00 87.97 ATOM 13 CA THR F 449 170.383 147.193 126.806 1.00 87.97 ATOM 14 C THR F 449 171.350 146.080 126.437 1.00 87.97 ATOM 15 O THR F 449 172.296 145.786 127.176 1.00 87.97 ATOM 16 CB THR F 449 169.021 146.619 127.197 1.00 87.97 ATOM 17 OG1 THR F 449 168.194 147.663 127.726 1.00 87.97 ATOM 18 CG2 THR F 449 169.163 145.497 128.216 1.00 87.97 ATOM 19 N ILE F 450 171.142 145.471 125.283 1.00 86.07 ATOM 20 CA ILE F 450 172.097 144.548 124.693 1.00 86.07 ATOM 21 C ILE F 450 172.679 145.272 123.491 1.00 86.07 ATOM 22 O ILE F 450 172.000 145.433 122.471 1.00 86.07 ATOM 23 CB ILE F 450 171.445 143.228 124.283 1.00 86.07 ATOM 24 CG1 ILE F 450 170.546 142.713 125.394 1.00 86.07 ATOM 25 CG2 ILE F 450 172.502 142.203 124.003 1.00 86.07 ATOM 26 CD1 ILE F 450 169.540 141.715 124.911 1.00 86.07 ATOM 27 N ARG F 451 173.921 145.730 123.606 1.00 87.01 ATOM 28 CA ARG F 451 174.517 146.480 122.515 1.00 87.01 ATOM 29 C ARG F 451 174.842 145.554 121.349 1.00 87.01 ATOM 30 O ARG F 451 175.069 144.353 121.520 1.00 87.01 ATOM 31 CB ARG F 451 175.764 147.232 122.992 1.00 87.01 ATOM 32 CG ARG F 451 176.958 146.379 123.388 1.00 87.01 ATOM 33 CD ARG F 451 177.998 146.384 122.284 1.00 87.01 ATOM 34 NE ARG F 451 179.059 145.419 122.511 1.00 87.01 ATOM 35 CZ ARG F 451 179.719 144.826 121.529 1.00 87.01 ATOM 36 NH1 ARG F 451 179.388 145.078 120.271 1.00 87.01 ATOM 37 NH2 ARG F 451 180.680 143.956 121.800 1.00 87.01 ATOM 38 N ILE F 452 174.859 146.135 120.154 1.00 81.91 ATOM 39 CA ILE F 452 174.967 145.401 118.897 1.00 81.91 ATOM 40 C ILE F 452 176.217 145.888 118.175 1.00 81.91 ATOM 41 O ILE F 452 176.651 147.026 118.398 1.00 81.91 ATOM 42 CB ILE F 452 173.714 145.613 118.025 1.00 81.91 ATOM 43 CG1 ILE F 452 172.437 145.573 118.860 1.00 81.91 ATOM 44 CG2 ILE F 452 173.613 144.588 116.907 1.00 81.91 ATOM 45 CD1 ILE F 452 172.124 144.221 119.404 1.00 81.91 ATOM 46 N PRO F 453 176.857 145.058 117.357 1.00 82.48 ATOM 47 CA PRO F 453 177.751 145.581 116.323 1.00 82.48 ATOM 48 C PRO F 453 177.027 146.515 115.363 1.00 82.48 ATOM 49 O PRO F 453 175.826 146.400 115.117 1.00 82.48 ATOM 50 CB PRO F 453 178.228 144.317 115.608 1.00 82.48 ATOM 51 CG PRO F 453 178.197 143.277 116.659 1.00 82.48 ATOM 52 CD PRO F 453 177.133 143.644 117.653 1.00 82.48 ATOM 53 N VAL F 454 177.806 147.427 114.785 1.00 75.81 ATOM 54 CA VAL F 454 177.263 148.543 114.023 1.00 75.81 ATOM 55 C VAL F 454 176.712 148.126 112.661 1.00 75.81 ATOM 56 O VAL F 454 175.744 148.725 112.181 1.00 75.81 ATOM 57 CB VAL F 454 178.344 149.623 113.879 1.00 75.81 ATOM 58 CG1 VAL F 454 178.483 150.387 115.169 1.00 75.81 ATOM 59 CG2 VAL F 454 179.668 148.978 113.550 1.00 75.81 ATOM 60 N HIS F 455 177.307 147.118 112.013 1.00 83.59 ATOM 61 CA HIS F 455 176.901 146.773 110.653 1.00 83.59 ATOM 62 C HIS F 455 175.521 146.143 110.623 1.00 83.59 ATOM 63 O HIS F 455 174.808 146.260 109.621 1.00 83.59 ATOM 64 CB HIS F 455 177.926 145.841 110.013 1.00 83.59 ATOM 65 CG HIS F 455 179.292 146.442 109.901 1.00 83.59 ATOM 66 ND1 HIS F 455 180.435 145.683 109.786 1.00 83.59 ATOM 67 CD2 HIS F 455 179.697 147.733 109.903 1.00 83.59 ATOM 68 CE1 HIS F 455 181.485 146.482 109.715 1.00 83.59 ATOM 69 NE2 HIS F 455 181.065 147.731 109.787 1.00 83.59 ATOM 70 N MET F 456 175.135 145.474 111.704 1.00 84.95 ATOM 71 CA MET F 456 173.747 145.077 111.879 1.00 84.95 ATOM 72 C MET F 456 172.858 146.296 112.062 1.00 84.95 ATOM 73 O MET F 456 171.789 146.391 111.449 1.00 84.95 ATOM 74 CB MET F 456 173.630 144.152 113.086 1.00 84.95 ATOM 75 CG MET F 456 174.423 142.870 112.960 1.00 84.95 ATOM 76 SD MET F 456 173.838 141.785 111.645 1.00 84.95 ATOM 77 CE MET F 456 175.157 140.580 111.624 1.00 84.95 ATOM 78 N ILE F 457 173.297 147.236 112.908 1.00 86.99 ATOM 79 CA ILE F 457 172.520 148.434 113.226 1.00 86.99 ATOM 80 C ILE F 457 172.335 149.296 111.986 1.00 86.99 ATOM 81 O ILE F 457 171.262 149.874 111.769 1.00 86.99 ATOM 82 CB ILE F 457 173.199 149.208 114.373 1.00 86.99 ATOM 83 CG1 ILE F 457 173.129 148.403 115.665 1.00 86.99 ATOM 84 CG2 ILE F 457 172.573 150.580 114.593 1.00 86.99 ATOM 85 CD1 ILE F 457 171.731 148.230 116.204 1.00 86.99 ATOM 86 N GLU F 458 173.366 149.361 111.137 1.00 94.21 ATOM 87 CA GLU F 458 173.229 149.985 109.825 1.00 94.21 ATOM 88 C GLU F 458 172.193 149.258 108.973 1.00 94.21 ATOM 89 O GLU F 458 171.270 149.879 108.433 1.00 94.21 ATOM 90 CB GLU F 458 174.580 150.003 109.112 1.00 94.21 ATOM 91 CG GLU F 458 175.542 151.080 109.581 1.00 94.21 ATOM 92 CD GLU F 458 176.445 151.580 108.461 1.00 94.21 ATOM 93 OE1 GLU F 458 177.615 151.917 108.727 1.00 94.21 ATOM 94 OE2 GLU F 458 175.982 151.627 107.304 1.00 94.21 ATOM 95 N THR F 459 172.320 147.931 108.865 1.00 86.86 ATOM 96 CA THR F 459 171.479 147.168 107.946 1.00 86.86 ATOM 97 C THR F 459 170.046 147.054 108.447 1.00 86.86 ATOM 98 O THR F 459 169.107 147.036 107.641 1.00 86.86 ATOM 99 CB THR F 459 172.082 145.781 107.726 1.00 86.86 ATOM 100 OG1 THR F 459 173.487 145.911 107.472 1.00 86.86 ATOM 101 CG2 THR F 459 171.422 145.077 106.548 1.00 86.86 ATOM 102 N ILE F 460 169.847 147.019 109.765 1.00 92.93 ATOM 103 CA ILE F 460 168.490 146.962 110.284 1.00 92.93 ATOM 104 C ILE F 460 167.762 148.291 110.078 1.00 92.93 ATOM 105 O ILE F 460 166.527 148.323 110.051 1.00 92.93 ATOM 106 CB ILE F 460 168.525 146.526 111.758 1.00 92.93 ATOM 107 CG1 ILE F 460 167.187 145.947 112.191 1.00 92.93 ATOM 108 CG2 ILE F 460 168.882 147.687 112.669 1.00 92.93 ATOM 109 CD1 ILE F 460 167.297 145.110 113.435 1.00 92.93 ATOM 110 N ASN F 461 168.487 149.383 109.857 1.00 98.63 ATOM 111 CA ASN F 461 167.867 150.636 109.469 1.00 98.63 ATOM 112 C ASN F 461 167.741 150.772 107.964 1.00 98.63 ATOM 113 O ASN F 461 167.554 151.884 107.470 1.00 98.63 ATOM 114 CB ASN F 461 168.649 151.816 110.035 1.00 98.63 ATOM 115 CG ASN F 461 168.536 151.910 111.528 1.00 98.63 ATOM 116 OD1 ASN F 461 169.494 152.247 112.215 1.00 98.63 ATOM 117 ND2 ASN F 461 167.356 151.613 112.043 1.00 98.63 ATOM 118 N LYS F 462 167.880 149.675 107.228 1.00 98.95 ATOM 119 CA LYS F 462 167.499 149.653 105.828 1.00 98.95 ATOM 120 C LYS F 462 166.147 148.999 105.629 1.00 98.95 ATOM 121 O LYS F 462 165.391 149.415 104.753 1.00 98.95 ATOM 122 CB LYS F 462 168.553 148.918 105.003 1.00 98.95 ATOM 123 CG LYS F 462 169.962 149.354 105.321 1.00 98.95 ATOM 124 CD LYS F 462 170.956 148.725 104.371 1.00 98.95 ATOM 125 CE LYS F 462 171.132 149.559 103.117 1.00 98.95 ATOM 126 NZ LYS F 462 171.824 150.846 103.384 1.00 98.95 ATOM 127 N LEU F 463 165.833 147.993 106.442 1.00103.70 ATOM 128 CA LEU F 463 164.548 147.312 106.347 1.00103.70 ATOM 129 C LEU F 463 163.425 148.212 106.825 1.00103.70 ATOM 130 O LEU F 463 162.416 148.395 106.134 1.00103.70 ATOM 131 CB LEU F 463 164.584 146.035 107.173 1.00103.70 ATOM 132 CG LEU F 463 165.926 145.312 107.128 1.00103.70 ATOM 133 CD1 LEU F 463 165.989 144.257 108.216 1.00103.70 ATOM 134 CD2 LEU F 463 166.113 144.678 105.772 1.00103.70 ATOM 135 N ASN F 464 163.603 148.811 107.996 1.00109.43 ATOM 136 CA ASN F 464 162.666 149.798 108.506 1.00109.43 ATOM 137 C ASN F 464 162.798 151.145 107.807 1.00109.43 ATOM 138 O ASN F 464 162.077 152.081 108.167 1.00109.43 ATOM 139 CB ASN F 464 162.865 149.934 110.015 1.00109.43 ATOM 140 CG ASN F 464 162.786 148.588 110.726 1.00109.43 ATOM 141 OD1 ASN F 464 162.111 147.675 110.258 1.00109.43 ATOM 142 ND2 ASN F 464 163.485 148.457 111.845 1.00109.43 ATOM 143 N ARG F 465 163.704 151.272 106.834 1.00103.97 ATOM 144 CA ARG F 465 163.661 152.369 105.883 1.00103.97 ATOM 145 C ARG F 465 163.068 151.932 104.549 1.00103.97 ATOM 146 O ARG F 465 162.534 152.769 103.813 1.00103.97 ATOM 147 CB ARG F 465 165.066 152.954 105.670 1.00103.97 ATOM 148 CG ARG F 465 165.047 154.314 104.989 1.00103.97 ATOM 149 CD ARG F 465 166.413 154.866 104.648 1.00103.97 ATOM 150 NE ARG F 465 166.274 156.130 103.939 1.00103.97 ATOM 151 CZ ARG F 465 166.064 156.237 102.629 1.00103.97 ATOM 152 NH1 ARG F 465 165.960 155.150 101.876 1.00103.97 ATOM 153 NH2 ARG F 465 165.953 157.433 102.068 1.00103.97 ATOM 154 N ILE F 466 163.094 150.635 104.245 1.00101.91 ATOM 155 CA ILE F 466 162.362 150.149 103.081 1.00101.91 ATOM 156 C ILE F 466 160.869 150.088 103.398 1.00101.91 ATOM 157 O ILE F 466 160.028 150.306 102.517 1.00101.91 ATOM 158 CB ILE F 466 162.958 148.795 102.644 1.00101.91 ATOM 159 CG1 ILE F 466 164.167 149.026 101.742 1.00101.91 ATOM 160 CG2 ILE F 466 161.971 147.884 101.947 1.00101.91 ATOM 161 CD1 ILE F 466 165.010 147.794 101.532 1.00101.91 ATOM 162 N SER F 467 160.523 149.909 104.675 1.00107.01 ATOM 163 CA SER F 467 159.138 149.719 105.091 1.00107.01 ATOM 164 C SER F 467 158.289 150.969 104.904 1.00107.01 ATOM 165 O SER F 467 157.059 150.882 104.953 1.00107.01 ATOM 166 CB SER F 467 159.100 149.272 106.550 1.00107.01 ATOM 167 OG SER F 467 160.085 148.288 106.804 1.00107.01 ATOM 168 N ARG F 468 158.913 152.127 104.708 1.00113.20 ATOM 169 CA ARG F 468 158.183 153.268 104.180 1.00113.20 ATOM 170 C ARG F 468 157.959 153.115 102.680 1.00113.20 ATOM 171 O ARG F 468 156.839 153.292 102.189 1.00113.20 ATOM 172 CB ARG F 468 158.940 154.561 104.482 1.00113.20 ATOM 173 CG ARG F 468 158.794 155.045 105.914 1.00113.20 ATOM 174 CD ARG F 468 159.432 156.406 106.098 1.00113.20 ATOM 175 NE ARG F 468 160.876 156.391 105.881 1.00113.20 ATOM 176 CZ ARG F 468 161.623 157.486 105.775 1.00113.20 ATOM 177 NH1 ARG F 468 161.059 158.684 105.866 1.00113.20 ATOM 178 NH2 ARG F 468 162.933 157.387 105.579 1.00113.20 ATOM 179 N GLN F 469 159.019 152.768 101.944 1.00110.53 ATOM 180 CA GLN F 469 158.939 152.626 100.494 1.00110.53 ATOM 181 C GLN F 469 158.088 151.440 100.065 1.00110.53 ATOM 182 O GLN F 469 157.502 151.480 98.980 1.00110.53 ATOM 183 CB GLN F 469 160.340 152.479 99.912 1.00110.53 ATOM 184 CG GLN F 469 161.368 153.307 100.637 1.00110.53 ATOM 185 CD GLN F 469 162.774 152.853 100.345 1.00110.53 ATOM 186 OE1 GLN F 469 163.034 151.664 100.180 1.00110.53 ATOM 187 NE2 GLN F 469 163.691 153.803 100.253 1.00110.53 ATOM 188 N MET F 470 158.010 150.388 100.876 1.00112.95 ATOM 189 CA MET F 470 157.062 149.328 100.577 1.00112.95 ATOM 190 C MET F 470 155.626 149.749 100.848 1.00112.95 ATOM 191 O MET F 470 154.704 149.198 100.242 1.00112.95 ATOM 192 CB MET F 470 157.399 148.075 101.380 1.00112.95 ATOM 193 CG MET F 470 158.479 147.223 100.760 1.00112.95 ATOM 194 SD MET F 470 158.205 146.862 99.019 1.00112.95 ATOM 195 CE MET F 470 156.840 145.710 99.087 1.00112.95 ATOM 196 N LEU F 471 155.420 150.714 101.737 1.00115.05 ATOM 197 CA LEU F 471 154.105 151.290 101.981 1.00115.05 ATOM 198 C LEU F 471 153.736 152.374 100.978 1.00115.05 ATOM 199 O LEU F 471 152.673 152.981 101.111 1.00115.05 ATOM 200 CB LEU F 471 154.035 151.850 103.408 1.00115.05 ATOM 201 CG LEU F 471 153.422 150.988 104.520 1.00115.05 ATOM 202 CD1 LEU F 471 151.904 150.911 104.374 1.00115.05 ATOM 203 CD2 LEU F 471 154.006 149.575 104.547 1.00115.05 ATOM 204 N GLN F 472 154.590 152.644 99.994 1.00124.44 ATOM 205 CA GLN F 472 154.245 153.520 98.883 1.00124.44 ATOM 206 C GLN F 472 153.901 152.732 97.626 1.00124.44 ATOM 207 O GLN F 472 152.894 153.009 96.966 1.00124.44 ATOM 208 CB GLN F 472 155.396 154.496 98.599 1.00124.44 ATOM 209 CG GLN F 472 155.226 155.316 97.320 1.00124.44 ATOM 210 CD GLN F 472 156.471 156.099 96.933 1.00124.44 ATOM 211 OE1 GLN F 472 157.544 155.529 96.747 1.00124.44 ATOM 212 NE2 GLN F 472 156.329 157.415 96.807 1.00124.44 ATOM 213 N GLU F 473 154.708 151.726 97.299 1.00127.42 ATOM 214 CA GLU F 473 154.552 151.026 96.031 1.00127.42 ATOM 215 C GLU F 473 153.397 150.036 96.084 1.00127.42 ATOM 216 O GLU F 473 152.625 149.924 95.129 1.00127.42 ATOM 217 CB GLU F 473 155.861 150.332 95.665 1.00127.42 ATOM 218 CG GLU F 473 157.065 151.257 95.724 1.00127.42 ATOM 219 CD GLU F 473 158.360 150.547 95.382 1.00127.42 ATOM 220 OE1 GLU F 473 158.460 150.032 94.248 1.00127.42 ATOM 221 OE2 GLU F 473 159.266 150.486 96.246 1.00127.42 ATOM 222 N MET F 474 153.267 149.307 97.191 1.00122.99 ATOM 223 CA MET F 474 152.106 148.459 97.419 1.00122.99 ATOM 224 C MET F 474 151.088 149.140 98.321 1.00122.99 ATOM 225 O MET F 474 149.877 148.979 98.130 1.00122.99 ATOM 226 CB MET F 474 152.534 147.121 98.029 1.00122.99 ATOM 227 CG MET F 474 151.437 146.054 98.023 1.00122.99 ATOM 228 SD MET F 474 152.046 144.388 98.344 1.00122.99 ATOM 229 CE MET F 474 152.115 144.382 100.133 1.00122.99 ATOM 230 N GLY F 475 151.558 149.906 99.299 1.00123.63 ATOM 231 CA GLY F 475 150.666 150.558 100.225 1.00123.63 ATOM 232 C GLY F 475 150.138 149.679 101.333 1.00123.63 ATOM 233 O GLY F 475 149.435 150.183 102.218 1.00123.63 ATOM 234 N ARG F 476 150.430 148.385 101.304 1.00126.14 ATOM 235 CA ARG F 476 150.078 147.457 102.362 1.00126.14 ATOM 236 C ARG F 476 151.347 147.045 103.094 1.00126.14 ATOM 237 O ARG F 476 152.463 147.307 102.637 1.00126.14 ATOM 238 CB ARG F 476 149.361 146.234 101.788 1.00126.14 ATOM 239 CG ARG F 476 148.137 146.590 100.998 1.00126.14 ATOM 240 CD ARG F 476 147.471 145.366 100.418 1.00126.14 ATOM 241 NE ARG F 476 148.192 144.823 99.275 1.00126.14 ATOM 242 CZ ARG F 476 148.749 143.617 99.242 1.00126.14 ATOM 243 NH1 ARG F 476 148.674 142.812 100.294 1.00126.14 ATOM 244 NH2 ARG F 476 149.373 143.212 98.149 1.00126.14 ATOM 245 N GLU F 477 151.172 146.413 104.243 1.00124.54 ATOM 246 CA GLU F 477 152.321 145.891 104.969 1.00124.54 ATOM 247 C GLU F 477 152.880 144.678 104.238 1.00124.54 ATOM 248 O GLU F 477 152.146 143.705 104.028 1.00124.54 ATOM 249 CB GLU F 477 151.939 145.516 106.397 1.00124.54 ATOM 250 CG GLU F 477 153.038 144.770 107.135 1.00124.54 ATOM 251 CD GLU F 477 154.240 145.647 107.429 1.00124.54 ATOM 252 OE1 GLU F 477 154.056 146.857 107.647 1.00124.54 ATOM 253 OE2 GLU F 477 155.374 145.127 107.425 1.00124.54 ATOM 254 N PRO F 478 154.148 144.686 103.842 1.00115.71 ATOM 255 CA PRO F 478 154.697 143.561 103.085 1.00115.71 ATOM 256 C PRO F 478 155.118 142.416 103.987 1.00115.71 ATOM 257 O PRO F 478 155.399 142.586 105.173 1.00115.71 ATOM 258 CB PRO F 478 155.914 144.177 102.389 1.00115.71 ATOM 259 CG PRO F 478 156.394 145.167 103.385 1.00115.71 ATOM 260 CD PRO F 478 155.138 145.763 103.998 1.00115.71 ATOM 261 N THR F 479 155.180 141.241 103.391 1.00115.97 ATOM 262 CA THR F 479 155.384 139.903 103.915 1.00115.97 ATOM 263 C THR F 479 156.852 139.515 103.766 1.00115.97 ATOM 264 O THR F 479 157.463 139.815 102.736 1.00115.97 ATOM 265 CB THR F 479 154.478 138.931 103.154 1.00115.97 ATOM 266 OG1 THR F 479 153.219 139.576 102.922 1.00115.97 ATOM 267 CG2 THR F 479 154.185 137.673 103.949 1.00115.97 TER