HEADER VIRAL PROTEIN 31-DEC-69 8H3M TITLE Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein TITLE 2 complexed with MO1 Fab COMPND MOL_ID: 2; COMPND 2 MOLECULE: MO1 heavy chain; COMPND 3 CHAIN: D, H; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 56 REMARK 465 ASP D 57 REMARK 465 ILE D 58 REMARK 465 GLY D 59 REMARK 465 TYR D 60 REMARK 465 ALA D 61 REMARK 465 ASP D 62 REMARK 465 SER D 63 REMARK 465 VAL D 64 REMARK 465 LYS D 65 REMARK 465 GLY D 66 REMARK 465 ARG D 67 REMARK 465 PHE D 68 REMARK 465 THR D 69 REMARK 465 ILE D 70 REMARK 465 SER D 71 REMARK 465 ARG D 72 DBREF 8H3M D 1 437 PDB 8H3M 8H3M 1 437 SEQRES 1 D 6 PHE THR PHE ASP ASP TYR SEQRES 1 D 26 SER TRP ASN SER GLY ASP ILE GLY TYR ALA ASP SER VAL SEQRES 2 D 26 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 1 D 15 LYS ASP LYS THR TYR ASP SER PRO GLY TYR PHE LEU ASN SEQRES 2 D 15 SER PHE ATOM 1 N PHE D 27 206.959 223.913 249.677 1.00109.66 ATOM 2 CA PHE D 27 206.092 223.004 248.937 1.00111.82 ATOM 3 C PHE D 27 204.778 223.680 248.559 1.00112.09 ATOM 4 O PHE D 27 204.536 224.834 248.913 1.00111.46 ATOM 5 CB PHE D 27 205.818 221.740 249.755 1.00111.53 ATOM 6 CG PHE D 27 204.908 221.961 250.930 1.00112.10 ATOM 7 CD1 PHE D 27 205.402 222.472 252.119 1.00111.64 ATOM 8 CD2 PHE D 27 203.560 221.650 250.850 1.00111.90 ATOM 9 CE1 PHE D 27 204.569 222.674 253.202 1.00111.07 ATOM 10 CE2 PHE D 27 202.722 221.850 251.930 1.00112.02 ATOM 11 CZ PHE D 27 203.228 222.363 253.108 1.00112.12 ATOM 12 N THR D 28 203.930 222.951 247.838 1.00113.13 ATOM 13 CA THR D 28 202.636 223.470 247.402 1.00113.39 ATOM 14 C THR D 28 201.625 223.253 248.519 1.00113.71 ATOM 15 O THR D 28 201.135 222.141 248.726 1.00113.79 ATOM 16 CB THR D 28 202.189 222.789 246.113 1.00113.78 ATOM 17 OG1 THR D 28 203.171 223.005 245.091 1.00113.70 ATOM 18 CG2 THR D 28 200.852 223.350 245.652 1.00113.23 ATOM 19 N PHE D 29 201.307 224.326 249.248 1.00112.62 ATOM 20 CA PHE D 29 200.329 224.224 250.325 1.00113.19 ATOM 21 C PHE D 29 198.939 223.900 249.792 1.00113.41 ATOM 22 O PHE D 29 198.117 223.321 250.512 1.00113.89 ATOM 23 CB PHE D 29 200.311 225.522 251.134 1.00112.99 ATOM 24 CG PHE D 29 199.192 225.603 252.131 1.00113.60 ATOM 25 CD1 PHE D 29 199.229 224.857 253.297 1.00112.49 ATOM 26 CD2 PHE D 29 198.107 226.433 251.906 1.00112.85 ATOM 27 CE1 PHE D 29 198.200 224.931 254.216 1.00111.88 ATOM 28 CE2 PHE D 29 197.075 226.513 252.821 1.00112.63 ATOM 29 CZ PHE D 29 197.122 225.761 253.978 1.00112.23 ATOM 30 N ASP D 30 198.663 224.251 248.535 1.00110.27 ATOM 31 CA ASP D 30 197.361 223.999 247.930 1.00110.60 ATOM 32 C ASP D 30 197.118 222.522 247.641 1.00110.39 ATOM 33 O ASP D 30 195.981 222.145 247.340 1.00110.49 ATOM 34 CB ASP D 30 197.236 224.813 246.638 1.00110.69 ATOM 35 CG ASP D 30 195.807 224.906 246.132 1.00110.95 ATOM 36 OD1 ASP D 30 194.874 224.541 246.876 1.00110.70 ATOM 37 OD2 ASP D 30 195.618 225.353 244.981 1.00110.45 ATOM 38 N ASP D 31 198.145 221.678 247.730 1.00107.45 ATOM 39 CA ASP D 31 198.025 220.270 247.374 1.00107.81 ATOM 40 C ASP D 31 197.900 219.355 248.585 1.00107.62 ATOM 41 O ASP D 31 197.937 218.130 248.427 1.00108.38 ATOM 42 CB ASP D 31 199.218 219.845 246.516 1.00107.40 ATOM 43 CG ASP D 31 199.098 220.313 245.082 1.00107.73 ATOM 44 OD1 ASP D 31 197.983 220.704 244.676 1.00107.85 ATOM 45 OD2 ASP D 31 200.118 220.296 244.362 1.00107.47 ATOM 46 N TYR D 32 197.755 219.907 249.784 1.00106.82 ATOM 47 CA TYR D 32 197.621 219.082 250.980 1.00107.32 ATOM 48 C TYR D 32 196.569 219.643 251.929 1.00106.11 ATOM 49 O TYR D 32 195.697 220.407 251.522 1.00106.36 ATOM 50 CB TYR D 32 198.965 218.957 251.701 1.00106.52 ATOM 51 CG TYR D 32 200.098 218.497 250.814 1.00107.06 ATOM 52 CD1 TYR D 32 200.332 217.145 250.596 1.00107.06 ATOM 53 CD2 TYR D 32 200.935 219.414 250.195 1.00107.10 ATOM 54 CE1 TYR D 32 201.369 216.722 249.787 1.00107.76 ATOM 55 CE2 TYR D 32 201.971 219.002 249.384 1.00107.04 ATOM 56 CZ TYR D 32 202.185 217.656 249.182 1.00107.17 ATOM 57 OH TYR D 32 203.220 217.247 248.373 1.00105.84 TER ATOM 1 N SER D 52 191.153 220.681 254.669 1.00104.87 ATOM 2 CA SER D 52 191.579 220.091 253.406 1.00104.42 ATOM 3 C SER D 52 192.209 221.137 252.493 1.00103.90 ATOM 4 O SER D 52 192.534 222.242 252.930 1.00103.05 ATOM 5 CB SER D 52 190.398 219.422 252.701 1.00104.36 ATOM 6 OG SER D 52 189.198 220.138 252.931 1.00104.84 ATOM 7 N TRP D 52A 192.384 220.778 251.220 1.00101.99 ATOM 8 CA TRP D 52A 193.015 221.693 250.275 1.00101.56 ATOM 9 C TRP D 52A 192.054 222.794 249.839 1.00100.84 ATOM 10 O TRP D 52A 192.463 223.947 249.663 1.00100.39 ATOM 11 CB TRP D 52A 193.541 220.918 249.065 1.00100.55 ATOM 12 CG TRP D 52A 192.475 220.479 248.111 1.00 99.98 ATOM 13 CD1 TRP D 52A 191.699 219.361 248.202 1.00 99.10 ATOM 14 CD2 TRP D 52A 192.063 221.157 246.920 1.00 99.54 ATOM 15 NE1 TRP D 52A 190.831 219.300 247.140 1.00 98.42 ATOM 16 CE2 TRP D 52A 191.035 220.392 246.338 1.00 99.44 ATOM 17 CE3 TRP D 52A 192.465 222.338 246.289 1.00 99.34 ATOM 18 CZ2 TRP D 52A 190.403 220.768 245.154 1.00100.07 ATOM 19 CZ3 TRP D 52A 191.837 222.709 245.115 1.00 99.73 ATOM 20 CH2 TRP D 52A 190.817 221.928 244.560 1.00 99.89 ATOM 21 N ASN D 53 190.777 222.462 249.658 1.00103.35 ATOM 22 CA ASN D 53 189.776 223.414 249.198 1.00103.24 ATOM 23 C ASN D 53 188.865 223.905 250.317 1.00104.82 ATOM 24 O ASN D 53 187.920 224.654 250.045 1.00103.83 ATOM 25 CB ASN D 53 188.938 222.796 248.078 1.00103.07 ATOM 26 CG ASN D 53 188.207 221.542 248.521 1.00104.21 ATOM 27 OD1 ASN D 53 188.470 221.003 249.597 1.00103.92 ATOM 28 ND2 ASN D 53 187.280 221.074 247.695 1.00103.29 ATOM 29 N SER D 54 189.125 223.499 251.558 1.00107.04 ATOM 30 CA SER D 54 188.286 223.847 252.704 1.00106.06 ATOM 31 C SER D 54 186.837 223.420 252.483 1.00104.87 ATOM 32 O SER D 54 186.120 223.109 253.434 1.00104.36 ATOM 33 CB SER D 54 188.356 225.349 252.992 1.00105.53 ATOM 34 OG SER D 54 189.699 225.784 253.108 1.00105.41 ATOM 35 N ASP D 72 194.195 230.229 253.707 1.00106.34 ATOM 36 CA ASP D 72 194.813 231.027 252.655 1.00107.84 ATOM 37 C ASP D 72 195.778 230.170 251.842 1.00109.28 ATOM 38 O ASP D 72 196.970 230.103 252.142 1.00108.50 ATOM 39 CB ASP D 72 195.540 232.234 253.252 1.00108.13 ATOM 40 CG ASP D 72 196.059 233.192 252.193 1.00108.79 ATOM 41 OD1 ASP D 72 195.759 232.994 250.997 1.00108.62 ATOM 42 OD2 ASP D 72 196.770 234.150 252.563 1.00107.71 ATOM 43 N ASN D 73 195.244 229.512 250.811 1.00110.86 ATOM 44 CA ASN D 73 196.067 228.636 249.982 1.00109.91 ATOM 45 C ASN D 73 197.104 229.428 249.195 1.00109.84 ATOM 46 O ASN D 73 198.191 228.917 248.899 1.00110.22 ATOM 47 CB ASN D 73 195.180 227.827 249.037 1.00108.74 ATOM 48 CG ASN D 73 194.386 226.757 249.759 1.00109.34 ATOM 49 OD1 ASN D 73 194.729 225.577 249.712 1.00109.03 ATOM 50 ND2 ASN D 73 193.320 227.167 250.438 1.00109.57 ATOM 51 N ALA D 74 196.785 230.675 248.844 1.00109.42 ATOM 52 CA ALA D 74 197.681 231.463 248.004 1.00109.52 ATOM 53 C ALA D 74 198.998 231.757 248.713 1.00109.42 ATOM 54 O ALA D 74 200.078 231.578 248.140 1.00108.88 ATOM 55 CB ALA D 74 196.992 232.761 247.582 1.00108.37 ATOM 56 N LYS D 75 198.929 232.200 249.968 1.00110.20 ATOM 57 CA LYS D 75 200.104 232.651 250.703 1.00110.25 ATOM 58 C LYS D 75 200.623 231.603 251.681 1.00110.31 ATOM 59 O LYS D 75 201.324 231.959 252.634 1.00110.13 ATOM 60 CB LYS D 75 199.800 233.955 251.445 1.00109.53 ATOM 61 CG LYS D 75 199.869 235.217 250.587 1.00109.65 ATOM 62 CD LYS D 75 198.722 235.296 249.590 1.00109.97 ATOM 63 CE LYS D 75 198.787 236.565 248.762 1.00109.50 ATOM 64 NZ LYS D 75 197.628 236.667 247.835 1.00109.34 ATOM 65 N ASN D 76 200.301 230.329 251.453 1.00113.82 ATOM 66 CA ASN D 76 200.673 229.200 252.319 1.00114.62 ATOM 67 C ASN D 76 200.680 229.529 253.814 1.00113.94 ATOM 68 O ASN D 76 201.240 228.787 254.620 1.00113.76 ATOM 69 CB ASN D 76 202.036 228.621 251.887 1.00114.85 ATOM 70 CG ASN D 76 203.212 229.568 252.130 1.00114.64 ATOM 71 OD1 ASN D 76 203.299 230.245 253.154 1.00113.94 ATOM 72 ND2 ASN D 76 204.130 229.607 251.172 1.00113.59 TER ATOM 1 N LYS D 94 201.505 219.068 258.409 1.00104.70 ATOM 2 CA LYS D 94 200.951 218.998 257.063 1.00104.62 ATOM 3 C LYS D 94 200.434 217.594 256.763 1.00104.97 ATOM 4 O LYS D 94 201.098 216.600 257.058 1.00104.53 ATOM 5 CB LYS D 94 202.004 219.413 256.030 1.00104.06 ATOM 6 CG LYS D 94 201.996 218.587 254.751 1.00104.57 ATOM 7 CD LYS D 94 203.252 218.819 253.929 1.00103.94 ATOM 8 CE LYS D 94 203.253 217.961 252.673 1.00103.70 ATOM 9 NZ LYS D 94 203.064 216.516 252.985 1.00103.84 ATOM 10 N ASP D 95 199.235 217.520 256.191 1.00105.23 ATOM 11 CA ASP D 95 198.675 216.234 255.799 1.00105.65 ATOM 12 C ASP D 95 199.415 215.674 254.591 1.00106.43 ATOM 13 O ASP D 95 199.774 216.408 253.666 1.00105.83 ATOM 14 CB ASP D 95 197.187 216.380 255.484 1.00105.29 ATOM 15 CG ASP D 95 196.369 215.204 255.973 1.00105.61 ATOM 16 OD1 ASP D 95 196.942 214.307 256.626 1.00104.44 ATOM 17 OD2 ASP D 95 195.150 215.181 255.708 1.00106.17 ATOM 18 N LYS D 96 199.644 214.359 254.604 1.00106.23 ATOM 19 CA LYS D 96 200.274 213.708 253.462 1.00105.75 ATOM 20 C LYS D 96 199.385 213.749 252.226 1.00105.49 ATOM 21 O LYS D 96 199.901 213.795 251.103 1.00105.08 ATOM 22 CB LYS D 96 200.635 212.262 253.820 1.00104.89 ATOM 23 CG LYS D 96 201.062 211.404 252.638 1.00104.66 ATOM 24 CD LYS D 96 202.548 211.089 252.693 1.00105.27 ATOM 25 CE LYS D 96 202.871 209.803 251.952 1.00105.57 ATOM 26 NZ LYS D 96 204.169 209.893 251.228 1.00105.03 ATOM 27 N THR D 97 198.070 213.763 252.407 1.00103.55 ATOM 28 CA THR D 97 197.110 213.834 251.315 1.00102.83 ATOM 29 C THR D 97 196.413 215.194 251.345 1.00102.85 ATOM 30 O THR D 97 196.751 216.074 252.141 1.00103.30 ATOM 31 CB THR D 97 196.104 212.683 251.398 1.00102.89 ATOM 32 OG1 THR D 97 195.023 213.051 252.264 1.00103.38 ATOM 33 CG2 THR D 97 196.773 211.428 251.935 1.00102.87 ATOM 34 N TYR D 98 195.435 215.361 250.460 1.00 98.78 ATOM 35 CA TYR D 98 194.769 216.639 250.256 1.00 98.28 ATOM 36 C TYR D 98 193.431 216.756 250.977 1.00 98.68 ATOM 37 O TYR D 98 192.835 217.836 250.961 1.00 98.12 ATOM 38 CB TYR D 98 194.565 216.886 248.755 1.00 98.35 ATOM 39 CG TYR D 98 193.793 215.788 248.053 1.00 98.61 ATOM 40 CD1 TYR D 98 194.440 214.660 247.564 1.00 98.57 ATOM 41 CD2 TYR D 98 192.417 215.875 247.885 1.00 98.76 ATOM 42 CE1 TYR D 98 193.741 213.653 246.926 1.00 98.25 ATOM 43 CE2 TYR D 98 191.709 214.872 247.246 1.00 98.38 ATOM 44 CZ TYR D 98 192.377 213.765 246.769 1.00 97.92 ATOM 45 OH TYR D 98 191.678 212.765 246.136 1.00 97.46 ATOM 46 N ASP D 99 192.947 215.690 251.612 1.00104.51 ATOM 47 CA ASP D 99 191.586 215.680 252.136 1.00104.28 ATOM 48 C ASP D 99 191.580 215.041 253.524 1.00104.49 ATOM 49 O ASP D 99 192.628 214.835 254.145 1.00104.92 ATOM 50 CB ASP D 99 190.646 214.965 251.157 1.00104.82 ATOM 51 CG ASP D 99 189.197 215.370 251.336 1.00105.22 ATOM 52 OD1 ASP D 99 188.926 216.243 252.187 1.00104.91 ATOM 53 OD2 ASP D 99 188.331 214.815 250.629 1.00105.14 ATOM 54 N SER D 100 190.371 214.726 254.004 1.00110.58 ATOM 55 CA SER D 100 190.043 214.270 255.351 1.00111.00 ATOM 56 C SER D 100 190.808 213.008 255.739 1.00110.85 ATOM 57 O SER D 100 191.301 212.285 254.865 1.00111.33 ATOM 58 CB SER D 100 188.531 214.035 255.454 1.00110.00 ATOM 59 OG SER D 100 188.212 213.012 256.381 1.00109.13 ATOM 60 N PRO D 100A 190.933 212.719 257.040 1.00109.90 ATOM 61 CA PRO D 100A 191.702 211.535 257.464 1.00110.11 ATOM 62 C PRO D 100A 191.167 210.201 256.965 1.00109.29 ATOM 63 O PRO D 100A 191.840 209.180 257.155 1.00108.64 ATOM 64 CB PRO D 100A 191.642 211.618 259.001 1.00109.75 ATOM 65 CG PRO D 100A 190.619 212.688 259.315 1.00109.67 ATOM 66 CD PRO D 100A 190.685 213.628 258.169 1.00109.06 ATOM 67 N GLY D 100B 189.992 210.159 256.339 1.00105.45 ATOM 68 CA GLY D 100B 189.501 208.874 255.882 1.00105.96 ATOM 69 C GLY D 100B 189.997 208.519 254.495 1.00106.58 ATOM 70 O GLY D 100B 189.367 208.859 253.490 1.00106.26 ATOM 71 N TYR D 100C 191.095 207.768 254.447 1.00103.55 ATOM 72 CA TYR D 100C 191.811 207.414 253.227 1.00102.59 ATOM 73 C TYR D 100C 192.800 206.309 253.560 1.00102.35 ATOM 74 O TYR D 100C 192.934 205.910 254.720 1.00103.15 ATOM 75 CB TYR D 100C 192.559 208.612 252.624 1.00102.08 ATOM 76 CG TYR D 100C 191.734 209.514 251.731 1.00102.42 ATOM 77 CD1 TYR D 100C 191.490 209.178 250.407 1.00101.84 ATOM 78 CD2 TYR D 100C 191.228 210.718 252.202 1.00102.77 ATOM 79 CE1 TYR D 100C 190.745 210.004 249.587 1.00103.12 ATOM 80 CE2 TYR D 100C 190.481 211.545 251.393 1.00102.77 ATOM 81 CZ TYR D 100C 190.244 211.187 250.086 1.00103.33 ATOM 82 OH TYR D 100C 189.502 212.016 249.278 1.00102.64 ATOM 83 N PHE D 100D 193.486 205.816 252.528 1.00 98.41 ATOM 84 CA PHE D 100D 194.522 204.812 252.736 1.00 97.97 ATOM 85 C PHE D 100D 195.877 205.422 253.071 1.00 98.12 ATOM 86 O PHE D 100D 196.769 204.698 253.524 1.00 97.47 ATOM 87 CB PHE D 100D 194.660 203.929 251.495 1.00 98.65 ATOM 88 CG PHE D 100D 193.621 202.851 251.394 1.00 99.38 ATOM 89 CD1 PHE D 100D 192.289 203.168 251.194 1.00 98.46 ATOM 90 CD2 PHE D 100D 193.981 201.517 251.488 1.00 98.92 ATOM 91 CE1 PHE D 100D 191.336 202.176 251.099 1.00 98.48 ATOM 92 CE2 PHE D 100D 193.031 200.522 251.392 1.00 98.53 ATOM 93 CZ PHE D 100D 191.707 200.852 251.197 1.00 98.53 ATOM 94 N LEU D 100E 196.054 206.729 252.865 1.00102.28 ATOM 95 CA LEU D 100E 197.379 207.339 252.892 1.00103.49 ATOM 96 C LEU D 100E 197.449 208.541 253.832 1.00104.02 ATOM 97 O LEU D 100E 198.507 209.167 253.960 1.00103.40 ATOM 98 CB LEU D 100E 197.790 207.726 251.465 1.00103.08 ATOM 99 CG LEU D 100E 199.147 208.362 251.147 1.00102.48 ATOM 100 CD1 LEU D 100E 200.183 207.289 250.868 1.00101.96 ATOM 101 CD2 LEU D 100E 199.033 209.314 249.968 1.00102.25 ATOM 102 N ASN D 100F 196.357 208.863 254.519 1.00104.76 ATOM 103 CA ASN D 100F 196.317 210.028 255.393 1.00105.07 ATOM 104 C ASN D 100F 197.248 209.842 256.585 1.00105.95 ATOM 105 O ASN D 100F 197.189 208.822 257.279 1.00104.53 ATOM 106 CB ASN D 100F 194.892 210.295 255.874 1.00103.85 ATOM 107 CG ASN D 100F 194.253 211.467 255.162 1.00104.44 ATOM 108 OD1 ASN D 100F 193.752 211.330 254.048 1.00104.63 ATOM 109 ND2 ASN D 100F 194.251 212.622 255.807 1.00104.23 ATOM 110 N SER D 100G 198.101 210.841 256.814 1.00108.42 ATOM 111 CA SER D 100G 199.037 210.865 257.931 1.00107.67 ATOM 112 C SER D 100G 199.675 212.245 258.019 1.00108.11 ATOM 113 O SER D 100G 199.485 213.076 257.125 1.00109.20 ATOM 114 CB SER D 100G 200.111 209.787 257.772 1.00107.82 ATOM 115 OG SER D 100G 201.200 210.261 257.001 1.00108.59 ATOM 116 N PHE D 100H 200.426 212.506 259.083 1.00108.49 ATOM 117 CA PHE D 100H 201.092 213.797 259.231 1.00108.22 ATOM 118 C PHE D 100H 202.589 213.663 258.980 1.00107.82 ATOM 119 O PHE D 100H 203.342 213.252 259.863 1.00109.08 ATOM 120 CB PHE D 100H 200.845 214.393 260.621 1.00108.60 ATOM 121 CG PHE D 100H 199.390 214.592 260.960 1.00109.17 ATOM 122 CD1 PHE D 100H 198.420 214.617 259.970 1.00108.94 ATOM 123 CD2 PHE D 100H 198.997 214.777 262.275 1.00108.86 ATOM 124 CE1 PHE D 100H 197.088 214.803 260.287 1.00108.48 ATOM 125 CE2 PHE D 100H 197.667 214.967 262.598 1.00108.32 ATOM 126 CZ PHE D 100H 196.711 214.981 261.603 1.00108.03 TER