HEADER VIRAL PROTEIN 31-DEC-69 8H3M TITLE Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein TITLE 2 complexed with MO1 Fab COMPND MOL_ID: 2; COMPND 2 MOLECULE: MO1 heavy chain; COMPND 3 CHAIN: D, H; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS H 35 REMARK 465 TRP H 36 REMARK 465 VAL H 37 REMARK 465 ARG H 38 REMARK 465 GLN H 39 REMARK 465 ILE H 40 REMARK 465 PRO H 41 REMARK 465 GLY H 42 REMARK 465 LYS H 43 REMARK 465 GLY H 44 REMARK 465 LEU H 45 REMARK 465 GLU H 46 REMARK 465 TRP H 47 REMARK 465 VAL H 48 REMARK 465 SER H 49 REMARK 465 GLY H 50 REMARK 465 ILE H 51 REMARK 465 ASP H 57 REMARK 465 ILE H 58 REMARK 465 GLY H 59 REMARK 465 TYR H 60 REMARK 465 ALA H 61 REMARK 465 ASP H 62 REMARK 465 SER H 63 REMARK 465 VAL H 64 REMARK 465 LYS H 65 REMARK 465 GLY H 66 REMARK 465 ARG H 67 REMARK 465 PHE H 68 REMARK 465 THR H 69 REMARK 465 ILE H 70 REMARK 465 SER H 71 DBREF 8H3M H 1 439 PDB 8H3M 8H3M 1 439 SEQRES 1 H 48 THR PHE ASP ASP TYR ALA MET HIS TRP VAL ARG GLN ILE SEQRES 2 H 48 PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE SER TRP SEQRES 3 H 48 ASN SER GLY ASP ILE GLY TYR ALA ASP SER VAL LYS GLY SEQRES 4 H 48 ARG PHE THR ILE SER ARG ASP ASN ALA SEQRES 1 H 13 LYS ASP LYS THR TYR ASP SER PRO GLY TYR PHE LEU ASN ATOM 1 N THR H 28 212.358 161.226 245.882 1.00106.98 ATOM 2 CA THR H 28 213.187 162.327 245.403 1.00107.62 ATOM 3 C THR H 28 213.757 163.112 246.579 1.00107.90 ATOM 4 O THR H 28 213.138 164.058 247.065 1.00108.22 ATOM 5 CB THR H 28 212.391 163.276 244.489 1.00107.83 ATOM 6 OG1 THR H 28 211.554 162.508 243.616 1.00107.25 ATOM 7 CG2 THR H 28 213.335 164.128 243.658 1.00107.39 ATOM 8 N PHE H 29 214.944 162.704 247.032 1.00109.35 ATOM 9 CA PHE H 29 215.539 163.310 248.219 1.00109.95 ATOM 10 C PHE H 29 215.952 164.754 247.964 1.00110.24 ATOM 11 O PHE H 29 215.759 165.625 248.820 1.00110.38 ATOM 12 CB PHE H 29 216.737 162.481 248.685 1.00109.26 ATOM 13 CG PHE H 29 217.493 163.100 249.826 1.00109.44 ATOM 14 CD1 PHE H 29 217.006 163.023 251.120 1.00109.60 ATOM 15 CD2 PHE H 29 218.692 163.757 249.606 1.00108.96 ATOM 16 CE1 PHE H 29 217.697 163.593 252.171 1.00109.88 ATOM 17 CE2 PHE H 29 219.387 164.328 250.654 1.00109.45 ATOM 18 CZ PHE H 29 218.890 164.245 251.937 1.00109.88 ATOM 19 N ASP H 30 216.528 165.026 246.790 1.00109.52 ATOM 20 CA ASP H 30 217.111 166.340 246.533 1.00109.54 ATOM 21 C ASP H 30 216.060 167.442 246.550 1.00109.32 ATOM 22 O ASP H 30 216.346 168.574 246.954 1.00109.62 ATOM 23 CB ASP H 30 217.847 166.333 245.194 1.00109.39 ATOM 24 CG ASP H 30 217.039 165.682 244.096 1.00110.61 ATOM 25 OD1 ASP H 30 216.457 164.609 244.354 1.00111.36 ATOM 26 OD2 ASP H 30 216.979 166.244 242.982 1.00109.85 ATOM 27 N ASP H 31 214.840 167.136 246.115 1.00106.55 ATOM 28 CA ASP H 31 213.811 168.163 246.007 1.00107.16 ATOM 29 C ASP H 31 212.975 168.264 247.277 1.00107.16 ATOM 30 O ASP H 31 211.742 168.228 247.212 1.00107.19 ATOM 31 CB ASP H 31 212.909 167.880 244.802 1.00106.56 ATOM 32 CG ASP H 31 212.133 169.102 244.353 1.00107.45 ATOM 33 OD1 ASP H 31 212.304 170.178 244.964 1.00107.12 ATOM 34 OD2 ASP H 31 211.346 168.985 243.389 1.00107.48 ATOM 35 N TYR H 32 213.625 168.411 248.429 1.00106.67 ATOM 36 CA TYR H 32 212.917 168.481 249.703 1.00107.15 ATOM 37 C TYR H 32 213.846 169.079 250.751 1.00107.37 ATOM 38 O TYR H 32 215.043 169.263 250.518 1.00108.29 ATOM 39 CB TYR H 32 212.417 167.102 250.143 1.00106.20 ATOM 40 CG TYR H 32 211.026 166.776 249.652 1.00106.24 ATOM 41 CD1 TYR H 32 209.948 167.588 249.972 1.00106.54 ATOM 42 CD2 TYR H 32 210.794 165.661 248.857 1.00106.52 ATOM 43 CE1 TYR H 32 208.676 167.296 249.521 1.00107.20 ATOM 44 CE2 TYR H 32 209.525 165.360 248.402 1.00107.25 ATOM 45 CZ TYR H 32 208.470 166.181 248.738 1.00107.67 ATOM 46 OH TYR H 32 207.204 165.886 248.287 1.00106.88 ATOM 47 N ALA H 33 213.271 169.384 251.914 1.00109.95 ATOM 48 CA ALA H 33 214.004 169.920 253.053 1.00109.29 ATOM 49 C ALA H 33 213.873 168.974 254.238 1.00110.14 ATOM 50 O ALA H 33 212.776 168.496 254.545 1.00110.03 ATOM 51 CB ALA H 33 213.497 171.310 253.445 1.00108.46 ATOM 52 N MET H 34 214.993 168.716 254.905 1.00110.99 ATOM 53 CA MET H 34 215.019 167.781 256.023 1.00111.30 ATOM 54 C MET H 34 215.080 168.509 257.364 1.00110.55 ATOM 55 O MET H 34 216.128 169.020 257.759 1.00110.05 ATOM 56 CB MET H 34 216.208 166.829 255.885 1.00111.26 ATOM 57 CG MET H 34 216.152 165.954 254.643 1.00111.16 ATOM 58 SD MET H 34 214.471 165.471 254.208 1.00112.93 ATOM 59 CE MET H 34 214.597 163.687 254.302 1.00110.55 ATOM 60 N SER H 52 217.510 173.203 253.908 1.00104.41 ATOM 61 CA SER H 52 217.008 173.440 252.559 1.00105.07 ATOM 62 C SER H 52 217.536 172.398 251.580 1.00104.52 ATOM 63 O SER H 52 218.480 171.671 251.883 1.00104.50 ATOM 64 CB SER H 52 217.388 174.843 252.083 1.00104.42 ATOM 65 OG SER H 52 216.693 175.837 252.815 1.00104.74 ATOM 66 N TRP H 52A 216.909 172.327 250.402 1.00101.50 ATOM 67 CA TRP H 52A 217.363 171.395 249.375 1.00100.90 ATOM 68 C TRP H 52A 218.769 171.743 248.902 1.00101.60 ATOM 69 O TRP H 52A 219.595 170.851 248.674 1.00101.22 ATOM 70 CB TRP H 52A 216.379 171.387 248.201 1.00101.07 ATOM 71 CG TRP H 52A 216.628 172.462 247.180 1.00101.66 ATOM 72 CD1 TRP H 52A 216.084 173.710 247.155 1.00101.35 ATOM 73 CD2 TRP H 52A 217.485 172.377 246.035 1.00101.42 ATOM 74 NE1 TRP H 52A 216.551 174.412 246.073 1.00100.75 ATOM 75 CE2 TRP H 52A 217.412 173.615 245.367 1.00101.34 ATOM 76 CE3 TRP H 52A 218.311 171.377 245.514 1.00101.40 ATOM 77 CZ2 TRP H 52A 218.130 173.878 244.204 1.00101.52 ATOM 78 CZ3 TRP H 52A 219.022 171.641 244.358 1.00101.29 ATOM 79 CH2 TRP H 52A 218.927 172.881 243.716 1.00101.24 ATOM 80 N ASN H 53 219.057 173.033 248.750 1.00100.93 ATOM 81 CA ASN H 53 220.355 173.511 248.300 1.00100.15 ATOM 82 C ASN H 53 221.291 173.849 249.451 1.00100.65 ATOM 83 O ASN H 53 222.375 174.390 249.209 1.00 99.81 ATOM 84 CB ASN H 53 220.182 174.741 247.402 1.00 98.95 ATOM 85 CG ASN H 53 219.463 175.879 248.103 1.00100.74 ATOM 86 OD1 ASN H 53 218.530 175.657 248.874 1.00100.52 ATOM 87 ND2 ASN H 53 219.895 177.105 247.837 1.00100.29 ATOM 88 N SER H 54 220.893 173.555 250.690 1.00 98.12 ATOM 89 CA SER H 54 221.663 173.825 251.901 1.00 97.88 ATOM 90 C SER H 54 221.966 175.304 252.089 1.00 98.52 ATOM 91 O SER H 54 223.032 175.649 252.616 1.00 98.44 ATOM 92 CB SER H 54 222.972 173.026 251.930 1.00 96.94 ATOM 93 OG SER H 54 222.750 171.675 251.568 1.00 96.00 ATOM 94 N GLY H 55 221.067 176.189 251.671 1.00 98.04 ATOM 95 CA GLY H 55 221.257 177.615 251.853 1.00 97.27 ATOM 96 C GLY H 55 220.588 178.144 253.107 1.00 96.71 ATOM 97 O GLY H 55 221.195 178.181 254.178 1.00 96.33 ATOM 98 N ARG H 71 223.741 167.972 254.230 1.00105.05 ATOM 99 CA ARG H 71 223.005 166.924 253.533 1.00105.71 ATOM 100 C ARG H 71 223.723 166.497 252.255 1.00105.79 ATOM 101 O ARG H 71 224.700 167.120 251.842 1.00104.75 ATOM 102 CB ARG H 71 221.583 167.391 253.214 1.00105.24 ATOM 103 CG ARG H 71 221.508 168.673 252.400 1.00104.82 ATOM 104 CD ARG H 71 220.439 168.580 251.325 1.00104.92 ATOM 105 NE ARG H 71 219.112 168.905 251.833 1.00105.50 ATOM 106 CZ ARG H 71 218.007 168.244 251.513 1.00105.00 ATOM 107 NH1 ARG H 71 218.032 167.221 250.676 1.00104.21 ATOM 108 NH2 ARG H 71 216.849 168.619 252.047 1.00104.79 ATOM 109 N ASP H 72 223.232 165.424 251.636 1.00108.41 ATOM 110 CA ASP H 72 223.826 164.860 250.425 1.00108.74 ATOM 111 C ASP H 72 222.691 164.563 249.450 1.00109.53 ATOM 112 O ASP H 72 222.074 163.495 249.515 1.00109.33 ATOM 113 CB ASP H 72 224.635 163.605 250.743 1.00107.88 ATOM 114 CG ASP H 72 225.334 163.030 249.523 1.00108.06 ATOM 115 OD1 ASP H 72 225.273 163.652 248.441 1.00107.74 ATOM 116 OD2 ASP H 72 225.946 161.949 249.647 1.00108.40 ATOM 117 N ASN H 73 222.427 165.506 248.541 1.00109.06 ATOM 118 CA ASN H 73 221.347 165.329 247.576 1.00108.83 ATOM 119 C ASN H 73 221.567 164.103 246.699 1.00108.49 ATOM 120 O ASN H 73 220.598 163.469 246.266 1.00108.70 ATOM 121 CB ASN H 73 221.204 166.583 246.714 1.00107.72 ATOM 122 CG ASN H 73 220.349 167.646 247.373 1.00108.25 ATOM 123 OD1 ASN H 73 219.737 167.409 248.414 1.00107.79 ATOM 124 ND2 ASN H 73 220.304 168.827 246.769 1.00107.48 ATOM 125 N ALA H 74 222.821 163.755 246.429 1.00108.67 ATOM 126 CA ALA H 74 223.137 162.555 245.665 1.00108.98 ATOM 127 C ALA H 74 223.252 161.345 246.585 1.00108.70 ATOM 128 O ALA H 74 222.405 160.453 246.563 1.00108.74 ATOM 129 CB ALA H 74 224.422 162.748 244.880 1.00108.21 TER ATOM 1 N LYS H 94 210.478 164.752 256.780 1.00103.23 ATOM 2 CA LYS H 94 210.425 165.453 255.504 1.00102.60 ATOM 3 C LYS H 94 209.326 166.507 255.481 1.00103.41 ATOM 4 O LYS H 94 208.155 166.202 255.704 1.00103.04 ATOM 5 CB LYS H 94 210.211 164.465 254.357 1.00103.40 ATOM 6 CG LYS H 94 210.121 165.128 252.990 1.00103.62 ATOM 7 CD LYS H 94 209.537 164.186 251.953 1.00102.39 ATOM 8 CE LYS H 94 208.023 164.130 252.062 1.00102.96 ATOM 9 NZ LYS H 94 207.389 165.440 251.756 1.00102.68 ATOM 10 N ASP H 95 209.711 167.749 255.206 1.00106.85 ATOM 11 CA ASP H 95 208.769 168.845 255.043 1.00107.42 ATOM 12 C ASP H 95 208.021 168.687 253.726 1.00107.84 ATOM 13 O ASP H 95 208.550 168.123 252.764 1.00107.65 ATOM 14 CB ASP H 95 209.487 170.196 255.081 1.00107.32 ATOM 15 CG ASP H 95 208.747 171.227 255.913 1.00107.77 ATOM 16 OD1 ASP H 95 207.737 170.865 256.551 1.00107.90 ATOM 17 OD2 ASP H 95 209.178 172.399 255.932 1.00107.17 ATOM 18 N LYS H 96 206.779 169.178 253.694 1.00108.09 ATOM 19 CA LYS H 96 205.991 169.124 252.467 1.00107.97 ATOM 20 C LYS H 96 206.650 169.914 251.344 1.00108.47 ATOM 21 O LYS H 96 206.555 169.539 250.170 1.00108.73 ATOM 22 CB LYS H 96 204.579 169.652 252.723 1.00107.98 ATOM 23 CG LYS H 96 203.641 168.652 253.371 1.00108.01 ATOM 24 CD LYS H 96 202.271 168.686 252.712 1.00107.75 ATOM 25 CE LYS H 96 202.315 168.108 251.306 1.00107.81 ATOM 26 NZ LYS H 96 203.176 166.896 251.223 1.00107.29 ATOM 27 N THR H 97 207.319 171.011 251.683 1.00106.16 ATOM 28 CA THR H 97 207.828 171.935 250.682 1.00106.28 ATOM 29 C THR H 97 209.311 171.690 250.424 1.00106.12 ATOM 30 O THR H 97 209.983 170.978 251.175 1.00105.29 ATOM 31 CB THR H 97 207.601 173.379 251.132 1.00106.20 ATOM 32 OG1 THR H 97 206.372 173.457 251.865 1.00106.75 ATOM 33 CG2 THR H 97 207.482 174.289 249.927 1.00105.75 ATOM 34 N TYR H 98 209.814 172.283 249.336 1.00104.52 ATOM 35 CA TYR H 98 211.212 172.099 248.958 1.00104.15 ATOM 36 C TYR H 98 212.158 172.646 250.023 1.00104.49 ATOM 37 O TYR H 98 213.119 171.975 250.413 1.00104.85 ATOM 38 CB TYR H 98 211.487 172.739 247.589 1.00103.86 ATOM 39 CG TYR H 98 211.084 174.195 247.436 1.00104.64 ATOM 40 CD1 TYR H 98 209.749 174.573 247.403 1.00104.63 ATOM 41 CD2 TYR H 98 212.042 175.188 247.298 1.00104.10 ATOM 42 CE1 TYR H 98 209.381 175.896 247.260 1.00104.73 ATOM 43 CE2 TYR H 98 211.685 176.514 247.154 1.00104.23 ATOM 44 CZ TYR H 98 210.353 176.862 247.133 1.00104.78 ATOM 45 OH TYR H 98 209.988 178.180 246.988 1.00104.53 ATOM 46 N ASP H 99 211.896 173.854 250.518 1.00106.13 ATOM 47 CA ASP H 99 212.661 174.418 251.630 1.00105.70 ATOM 48 C ASP H 99 211.726 175.265 252.486 1.00105.76 ATOM 49 O ASP H 99 210.499 175.165 252.390 1.00106.34 ATOM 50 CB ASP H 99 213.850 175.273 251.166 1.00105.56 ATOM 51 CG ASP H 99 214.526 174.742 249.927 1.00106.86 ATOM 52 OD1 ASP H 99 215.100 173.639 249.987 1.00107.91 ATOM 53 OD2 ASP H 99 214.505 175.446 248.898 1.00104.91 ATOM 54 N SER H 100 212.324 176.099 253.336 1.00107.07 ATOM 55 CA SER H 100 211.578 177.078 254.126 1.00108.67 ATOM 56 C SER H 100 210.743 178.047 253.295 1.00108.46 ATOM 57 O SER H 100 209.625 178.375 253.724 1.00107.73 ATOM 58 CB SER H 100 212.551 177.842 255.035 1.00107.97 ATOM 59 OG SER H 100 212.741 177.157 256.262 1.00106.36 ATOM 60 N PRO H 100A 211.207 178.560 252.122 1.00108.51 ATOM 61 CA PRO H 100A 210.398 179.537 251.374 1.00107.39 ATOM 62 C PRO H 100A 208.977 179.107 251.047 1.00107.64 ATOM 63 O PRO H 100A 208.201 179.900 250.508 1.00107.54 ATOM 64 CB PRO H 100A 211.217 179.751 250.091 1.00106.85 ATOM 65 CG PRO H 100A 212.198 178.616 250.057 1.00107.25 ATOM 66 CD PRO H 100A 212.530 178.429 251.494 1.00107.74 ATOM 67 N GLY H 100B 208.624 177.865 251.346 1.00109.76 ATOM 68 CA GLY H 100B 207.232 177.479 251.297 1.00109.80 ATOM 69 C GLY H 100B 206.549 177.725 252.624 1.00109.25 ATOM 70 O GLY H 100B 205.892 176.829 253.163 1.00108.62 ATOM 71 N TYR H 100C 206.682 178.936 253.163 1.00106.73 ATOM 72 CA TYR H 100C 206.104 179.240 254.470 1.00106.72 ATOM 73 C TYR H 100C 204.623 179.568 254.375 1.00106.71 ATOM 74 O TYR H 100C 204.139 180.554 254.939 1.00105.74 ATOM 75 CB TYR H 100C 206.876 180.383 255.121 1.00106.38 ATOM 76 CG TYR H 100C 208.078 179.920 255.910 1.00106.99 ATOM 77 CD1 TYR H 100C 208.055 178.714 256.598 1.00106.59 ATOM 78 CD2 TYR H 100C 209.237 180.681 255.961 1.00106.83 ATOM 79 CE1 TYR H 100C 209.149 178.281 257.318 1.00106.12 ATOM 80 CE2 TYR H 100C 210.338 180.256 256.678 1.00106.90 ATOM 81 CZ TYR H 100C 210.288 179.055 257.355 1.00106.43 ATOM 82 OH TYR H 100C 211.379 178.623 258.073 1.00105.45 ATOM 83 N PHE H 100D 203.891 178.724 253.655 1.00107.32 ATOM 84 CA PHE H 100D 202.444 178.637 253.745 1.00107.88 ATOM 85 C PHE H 100D 201.983 177.190 253.683 1.00108.06 ATOM 86 O PHE H 100D 200.825 176.910 254.007 1.00107.37 ATOM 87 CB PHE H 100D 201.771 179.448 252.626 1.00107.27 ATOM 88 CG PHE H 100D 200.668 180.346 253.108 1.00107.63 ATOM 89 CD1 PHE H 100D 200.682 181.699 252.816 1.00107.71 ATOM 90 CD2 PHE H 100D 199.619 179.838 253.857 1.00107.91 ATOM 91 CE1 PHE H 100D 199.671 182.530 253.259 1.00108.09 ATOM 92 CE2 PHE H 100D 198.604 180.663 254.304 1.00107.78 ATOM 93 CZ PHE H 100D 198.630 182.011 254.005 1.00107.87 ATOM 94 N LEU H 100E 202.860 176.267 253.279 1.00111.63 ATOM 95 CA LEU H 100E 202.552 174.851 253.182 1.00112.01 ATOM 96 C LEU H 100E 203.496 173.983 254.000 1.00110.90 ATOM 97 O LEU H 100E 203.423 172.753 253.897 1.00110.44 ATOM 98 CB LEU H 100E 202.596 174.391 251.715 1.00111.73 ATOM 99 CG LEU H 100E 201.279 174.304 250.942 1.00111.61 ATOM 100 CD1 LEU H 100E 200.374 173.241 251.540 1.00110.26 ATOM 101 CD2 LEU H 100E 200.579 175.653 250.903 1.00110.76 ATOM 102 N ASN H 100F 204.386 174.580 254.790 1.00110.84 ATOM 103 CA ASN H 100F 205.337 173.836 255.610 1.00111.08 ATOM 104 C ASN H 100F 204.629 172.920 256.605 1.00110.99 ATOM 105 O ASN H 100F 203.612 173.292 257.189 1.00110.68 ATOM 106 CB ASN H 100F 206.262 174.799 256.360 1.00110.73 ATOM 107 CG ASN H 100F 207.578 175.027 255.641 1.00110.78 ATOM 108 OD1 ASN H 100F 207.628 175.083 254.414 1.00110.57 ATOM 109 ND2 ASN H 100F 208.654 175.161 256.408 1.00111.09 TER