HEADER TRANSCRIPTION 31-DEC-69 8JO2 TITLE Structural basis of transcriptional activation by the TITLE 2 OmpR/PhoB-family response regulator PmrA COMPND MOL_ID: 7; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 8JO2 F 1 613 UNP Q0P6L9 Q0P6L9_ECOL 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 204.215 206.147 166.546 1.00 42.60 ATOM 2 CA ARG F 448 204.309 207.083 167.654 1.00 42.60 ATOM 3 C ARG F 448 202.914 207.362 168.181 1.00 42.60 ATOM 4 O ARG F 448 201.981 207.568 167.403 1.00 42.60 ATOM 5 CB ARG F 448 204.965 208.383 167.228 1.00 42.60 ATOM 6 CG ARG F 448 206.461 208.310 167.142 1.00 42.60 ATOM 7 CD ARG F 448 207.075 209.472 167.866 1.00 42.60 ATOM 8 NE ARG F 448 208.483 209.259 168.156 1.00 42.60 ATOM 9 CZ ARG F 448 209.092 209.750 169.224 1.00 42.60 ATOM 10 NH1 ARG F 448 208.405 210.473 170.093 1.00 42.60 ATOM 11 NH2 ARG F 448 210.378 209.519 169.426 1.00 42.60 ATOM 12 N THR F 449 202.770 207.355 169.503 1.00 34.92 ATOM 13 CA THR F 449 201.469 207.649 170.085 1.00 34.92 ATOM 14 C THR F 449 201.089 209.100 169.846 1.00 34.92 ATOM 15 O THR F 449 199.990 209.397 169.371 1.00 34.92 ATOM 16 CB THR F 449 201.476 207.338 171.574 1.00 34.92 ATOM 17 OG1 THR F 449 201.838 205.969 171.769 1.00 34.92 ATOM 18 CG2 THR F 449 200.106 207.561 172.149 1.00 34.92 ATOM 19 N ILE F 450 201.996 210.016 170.158 1.00 32.88 ATOM 20 CA ILE F 450 201.829 211.436 169.888 1.00 32.88 ATOM 21 C ILE F 450 202.584 211.705 168.596 1.00 32.88 ATOM 22 O ILE F 450 203.813 211.712 168.576 1.00 32.88 ATOM 23 CB ILE F 450 202.351 212.290 171.040 1.00 32.88 ATOM 24 CG1 ILE F 450 201.612 211.950 172.324 1.00 32.88 ATOM 25 CG2 ILE F 450 202.163 213.736 170.740 1.00 32.88 ATOM 26 CD1 ILE F 450 202.250 212.524 173.536 1.00 32.88 ATOM 27 N ARG F 451 201.823 211.840 167.509 1.00 38.23 ATOM 28 CA ARG F 451 202.434 211.957 166.163 1.00 38.23 ATOM 29 C ARG F 451 203.418 213.113 166.062 1.00 38.23 ATOM 30 O ARG F 451 203.039 214.246 166.384 1.00 38.23 ATOM 31 CB ARG F 451 201.343 212.106 165.100 1.00 38.23 ATOM 32 CG ARG F 451 201.745 211.594 163.725 1.00 38.23 ATOM 33 CD ARG F 451 201.702 212.663 162.649 1.00 38.23 ATOM 34 NE ARG F 451 200.538 213.527 162.771 1.00 38.23 ATOM 35 CZ ARG F 451 200.586 214.829 163.030 1.00 38.23 ATOM 36 NH1 ARG F 451 201.752 215.431 163.194 1.00 38.23 ATOM 37 NH2 ARG F 451 199.467 215.523 163.124 1.00 38.23 ATOM 38 N ILE F 452 204.630 212.820 165.618 1.00 39.19 ATOM 39 CA ILE F 452 205.661 213.821 165.369 1.00 39.19 ATOM 40 C ILE F 452 205.715 214.051 163.865 1.00 39.19 ATOM 41 O ILE F 452 205.731 213.078 163.106 1.00 39.19 ATOM 42 CB ILE F 452 207.026 213.359 165.891 1.00 39.19 ATOM 43 CG1 ILE F 452 206.964 213.012 167.365 1.00 39.19 ATOM 44 CG2 ILE F 452 208.022 214.430 165.723 1.00 39.19 ATOM 45 CD1 ILE F 452 206.625 214.155 168.216 1.00 39.19 ATOM 46 N PRO F 453 205.744 215.285 163.387 1.00 43.09 ATOM 47 CA PRO F 453 205.786 215.498 161.941 1.00 43.09 ATOM 48 C PRO F 453 207.062 214.951 161.343 1.00 43.09 ATOM 49 O PRO F 453 208.055 214.787 162.051 1.00 43.09 ATOM 50 CB PRO F 453 205.703 217.018 161.807 1.00 43.09 ATOM 51 CG PRO F 453 205.121 217.466 163.055 1.00 43.09 ATOM 52 CD PRO F 453 205.645 216.556 164.101 1.00 43.09 ATOM 53 N VAL F 454 207.047 214.665 160.044 1.00 44.77 ATOM 54 CA VAL F 454 208.131 213.899 159.442 1.00 44.77 ATOM 55 C VAL F 454 209.450 214.642 159.574 1.00 44.77 ATOM 56 O VAL F 454 210.486 214.053 159.904 1.00 44.77 ATOM 57 CB VAL F 454 207.808 213.587 157.975 1.00 44.77 ATOM 58 CG1 VAL F 454 208.742 212.515 157.462 1.00 44.77 ATOM 59 CG2 VAL F 454 206.361 213.171 157.834 1.00 44.77 ATOM 60 N HIS F 455 209.437 215.948 159.317 1.00 50.80 ATOM 61 CA HIS F 455 210.682 216.701 159.374 1.00 50.80 ATOM 62 C HIS F 455 211.240 216.758 160.787 1.00 50.80 ATOM 63 O HIS F 455 212.463 216.726 160.975 1.00 50.80 ATOM 64 CB HIS F 455 210.474 218.099 158.807 1.00 50.80 ATOM 65 CG HIS F 455 209.631 218.984 159.663 1.00 50.80 ATOM 66 ND1 HIS F 455 210.144 219.714 160.712 1.00 50.80 ATOM 67 CD2 HIS F 455 208.312 219.282 159.607 1.00 50.80 ATOM 68 CE1 HIS F 455 209.174 220.411 161.276 1.00 50.80 ATOM 69 NE2 HIS F 455 208.054 220.167 160.624 1.00 50.80 ATOM 70 N MET F 456 210.376 216.818 161.794 1.00 47.21 ATOM 71 CA MET F 456 210.883 216.773 163.157 1.00 47.21 ATOM 72 C MET F 456 211.468 215.408 163.476 1.00 47.21 ATOM 73 O MET F 456 212.443 215.306 164.225 1.00 47.21 ATOM 74 CB MET F 456 209.789 217.132 164.147 1.00 47.21 ATOM 75 CG MET F 456 210.273 217.133 165.566 1.00 47.21 ATOM 76 SD MET F 456 211.260 218.584 165.924 1.00 47.21 ATOM 77 CE MET F 456 210.370 219.817 164.985 1.00 47.21 ATOM 78 N ILE F 457 210.900 214.344 162.912 1.00 45.90 ATOM 79 CA ILE F 457 211.501 213.026 163.080 1.00 45.90 ATOM 80 C ILE F 457 212.900 213.009 162.489 1.00 45.90 ATOM 81 O ILE F 457 213.842 212.484 163.095 1.00 45.90 ATOM 82 CB ILE F 457 210.620 211.945 162.436 1.00 45.90 ATOM 83 CG1 ILE F 457 209.341 211.746 163.228 1.00 45.90 ATOM 84 CG2 ILE F 457 211.362 210.654 162.390 1.00 45.90 ATOM 85 CD1 ILE F 457 209.550 211.008 164.498 1.00 45.90 ATOM 86 N GLU F 458 213.059 213.582 161.298 1.00 49.54 ATOM 87 CA GLU F 458 214.380 213.616 160.684 1.00 49.54 ATOM 88 C GLU F 458 215.365 214.401 161.538 1.00 49.54 ATOM 89 O GLU F 458 216.525 214.001 161.683 1.00 49.54 ATOM 90 CB GLU F 458 214.297 214.210 159.286 1.00 49.54 ATOM 91 CG GLU F 458 213.325 213.507 158.372 1.00 49.54 ATOM 92 CD GLU F 458 213.201 214.195 157.025 1.00 49.54 ATOM 93 OE1 GLU F 458 213.921 215.187 156.794 1.00 49.54 ATOM 94 OE2 GLU F 458 212.381 213.750 156.195 1.00 49.54 ATOM 95 N THR F 459 214.933 215.524 162.108 1.00 48.65 ATOM 96 CA THR F 459 215.846 216.286 162.957 1.00 48.65 ATOM 97 C THR F 459 216.209 215.511 164.218 1.00 48.65 ATOM 98 O THR F 459 217.357 215.561 164.680 1.00 48.65 ATOM 99 CB THR F 459 215.246 217.634 163.317 1.00 48.65 ATOM 100 OG1 THR F 459 214.065 217.430 164.085 1.00 48.65 ATOM 101 CG2 THR F 459 214.892 218.392 162.068 1.00 48.65 ATOM 102 N ILE F 460 215.251 214.787 164.793 1.00 51.39 ATOM 103 CA ILE F 460 215.565 213.980 165.966 1.00 51.39 ATOM 104 C ILE F 460 216.609 212.933 165.613 1.00 51.39 ATOM 105 O ILE F 460 217.549 212.684 166.378 1.00 51.39 ATOM 106 CB ILE F 460 214.299 213.326 166.534 1.00 51.39 ATOM 107 CG1 ILE F 460 213.347 214.371 167.077 1.00 51.39 ATOM 108 CG2 ILE F 460 214.658 212.411 167.664 1.00 51.39 ATOM 109 CD1 ILE F 460 211.970 213.846 167.283 1.00 51.39 ATOM 110 N ASN F 461 216.466 212.304 164.450 1.00 56.95 ATOM 111 CA ASN F 461 217.442 211.295 164.062 1.00 56.95 ATOM 112 C ASN F 461 218.804 211.909 163.768 1.00 56.95 ATOM 113 O ASN F 461 219.833 211.272 164.019 1.00 56.95 ATOM 114 CB ASN F 461 216.932 210.504 162.873 1.00 56.95 ATOM 115 CG ASN F 461 215.680 209.750 163.194 1.00 56.95 ATOM 116 OD1 ASN F 461 215.462 209.368 164.336 1.00 56.95 ATOM 117 ND2 ASN F 461 214.853 209.511 162.192 1.00 56.95 ATOM 118 N LYS F 462 218.837 213.129 163.231 1.00 57.07 ATOM 119 CA LYS F 462 220.106 213.838 163.132 1.00 57.07 ATOM 120 C LYS F 462 220.758 213.957 164.495 1.00 57.07 ATOM 121 O LYS F 462 221.959 213.703 164.646 1.00 57.07 ATOM 122 CB LYS F 462 219.919 215.227 162.542 1.00 57.07 ATOM 123 CG LYS F 462 220.098 215.336 161.059 1.00 57.07 ATOM 124 CD LYS F 462 220.081 216.805 160.684 1.00 57.07 ATOM 125 CE LYS F 462 219.974 217.022 159.194 1.00 57.07 ATOM 126 NZ LYS F 462 220.144 218.463 158.875 1.00 57.07 ATOM 127 N LEU F 463 219.986 214.365 165.504 1.00 56.93 ATOM 128 CA LEU F 463 220.574 214.457 166.837 1.00 56.93 ATOM 129 C LEU F 463 221.059 213.110 167.335 1.00 56.93 ATOM 130 O LEU F 463 222.098 213.032 167.988 1.00 56.93 ATOM 131 CB LEU F 463 219.615 215.064 167.847 1.00 56.93 ATOM 132 CG LEU F 463 219.295 216.516 167.598 1.00 56.93 ATOM 133 CD1 LEU F 463 218.248 216.972 168.563 1.00 56.93 ATOM 134 CD2 LEU F 463 220.574 217.246 167.861 1.00 56.93 ATOM 135 N ASN F 464 220.322 212.043 167.057 1.00 57.09 ATOM 136 CA ASN F 464 220.761 210.742 167.550 1.00 57.09 ATOM 137 C ASN F 464 222.077 210.318 166.905 1.00 57.09 ATOM 138 O ASN F 464 222.998 209.866 167.598 1.00 57.09 ATOM 139 CB ASN F 464 219.674 209.703 167.323 1.00 57.09 ATOM 140 CG ASN F 464 218.519 209.883 168.267 1.00 57.09 ATOM 141 OD1 ASN F 464 218.671 210.476 169.332 1.00 57.09 ATOM 142 ND2 ASN F 464 217.354 209.379 167.889 1.00 57.09 ATOM 143 N ARG F 465 222.201 210.482 165.588 1.00 67.09 ATOM 144 CA ARG F 465 223.452 210.133 164.922 1.00 67.09 ATOM 145 C ARG F 465 224.606 210.971 165.442 1.00 67.09 ATOM 146 O ARG F 465 225.689 210.450 165.758 1.00 67.09 ATOM 147 CB ARG F 465 223.326 210.340 163.424 1.00 67.09 ATOM 148 CG ARG F 465 222.490 209.357 162.691 1.00 67.09 ATOM 149 CD ARG F 465 222.722 209.624 161.229 1.00 67.09 ATOM 150 NE ARG F 465 222.830 211.061 160.992 1.00 67.09 ATOM 151 CZ ARG F 465 223.600 211.611 160.062 1.00 67.09 ATOM 152 NH1 ARG F 465 224.343 210.846 159.281 1.00 67.09 ATOM 153 NH2 ARG F 465 223.635 212.925 159.922 1.00 67.09 ATOM 154 N ILE F 466 224.407 212.286 165.504 1.00 61.50 ATOM 155 CA ILE F 466 225.484 213.163 165.927 1.00 61.50 ATOM 156 C ILE F 466 225.842 212.892 167.374 1.00 61.50 ATOM 157 O ILE F 466 227.016 212.954 167.754 1.00 61.50 ATOM 158 CB ILE F 466 225.085 214.622 165.682 1.00 61.50 ATOM 159 CG1 ILE F 466 225.134 214.902 164.187 1.00 61.50 ATOM 160 CG2 ILE F 466 226.011 215.558 166.406 1.00 61.50 ATOM 161 CD1 ILE F 466 224.194 215.978 163.744 1.00 61.50 ATOM 162 N SER F 467 224.854 212.556 168.200 1.00 59.65 ATOM 163 CA SER F 467 225.137 212.197 169.578 1.00 59.65 ATOM 164 C SER F 467 225.981 210.943 169.650 1.00 59.65 ATOM 165 O SER F 467 226.902 210.868 170.459 1.00 59.65 ATOM 166 CB SER F 467 223.840 212.010 170.347 1.00 59.65 ATOM 167 OG SER F 467 223.068 213.189 170.289 1.00 59.65 ATOM 168 N ARG F 468 225.688 209.944 168.814 1.00 65.32 ATOM 169 CA ARG F 468 226.531 208.752 168.794 1.00 65.32 ATOM 170 C ARG F 468 227.973 209.106 168.473 1.00 65.32 ATOM 171 O ARG F 468 228.906 208.706 169.189 1.00 65.32 ATOM 172 CB ARG F 468 226.021 207.747 167.768 1.00 65.32 ATOM 173 CG ARG F 468 224.862 206.898 168.200 1.00 65.32 ATOM 174 CD ARG F 468 224.801 205.671 167.316 1.00 65.32 ATOM 175 NE ARG F 468 225.083 206.017 165.929 1.00 65.32 ATOM 176 CZ ARG F 468 225.432 205.147 164.989 1.00 65.32 ATOM 177 NH1 ARG F 468 225.538 203.860 165.277 1.00 65.32 ATOM 178 NH2 ARG F 468 225.670 205.566 163.757 1.00 65.32 ATOM 179 N GLN F 469 228.181 209.844 167.384 1.00 66.83 ATOM 180 CA GLN F 469 229.563 210.071 166.984 1.00 66.83 ATOM 181 C GLN F 469 230.292 210.943 167.998 1.00 66.83 ATOM 182 O GLN F 469 231.446 210.658 168.327 1.00 66.83 ATOM 183 CB GLN F 469 229.659 210.664 165.580 1.00 66.83 ATOM 184 CG GLN F 469 229.111 212.045 165.388 1.00 66.83 ATOM 185 CD GLN F 469 229.225 212.489 163.942 1.00 66.83 ATOM 186 OE1 GLN F 469 229.756 211.765 163.104 1.00 66.83 ATOM 187 NE2 GLN F 469 228.763 213.702 163.652 1.00 66.83 ATOM 188 N MET F 470 229.633 211.970 168.538 1.00 67.21 ATOM 189 CA MET F 470 230.262 212.774 169.579 1.00 67.21 ATOM 190 C MET F 470 230.509 211.956 170.837 1.00 67.21 ATOM 191 O MET F 470 231.502 212.169 171.537 1.00 67.21 ATOM 192 CB MET F 470 229.400 213.987 169.905 1.00 67.21 ATOM 193 CG MET F 470 229.212 214.947 168.759 1.00 67.21 ATOM 194 SD MET F 470 228.237 216.374 169.252 1.00 67.21 ATOM 195 CE MET F 470 229.411 217.229 170.293 1.00 67.21 ATOM 196 N LEU F 471 229.613 211.018 171.141 1.00 62.84 ATOM 197 CA LEU F 471 229.782 210.145 172.293 1.00 62.84 ATOM 198 C LEU F 471 231.075 209.365 172.198 1.00 62.84 ATOM 199 O LEU F 471 231.851 209.301 173.157 1.00 62.84 ATOM 200 CB LEU F 471 228.600 209.188 172.378 1.00 62.84 ATOM 201 CG LEU F 471 228.524 208.257 173.571 1.00 62.84 ATOM 202 CD1 LEU F 471 228.714 209.040 174.826 1.00 62.84 ATOM 203 CD2 LEU F 471 227.184 207.571 173.577 1.00 62.84 ATOM 204 N GLN F 472 231.325 208.760 171.041 1.00 62.24 ATOM 205 CA GLN F 472 232.527 207.945 170.913 1.00 62.24 ATOM 206 C GLN F 472 233.776 208.799 170.742 1.00 62.24 ATOM 207 O GLN F 472 234.868 208.402 171.159 1.00 62.24 ATOM 208 CB GLN F 472 232.365 206.941 169.782 1.00 62.24 ATOM 209 CG GLN F 472 231.395 205.865 170.165 1.00 62.24 ATOM 210 CD GLN F 472 231.023 204.987 169.022 1.00 62.24 ATOM 211 OE1 GLN F 472 231.201 205.349 167.864 1.00 62.24 ATOM 212 NE2 GLN F 472 230.499 203.813 169.331 1.00 62.24 ATOM 213 N GLU F 473 233.644 209.977 170.137 1.00 65.49 ATOM 214 CA GLU F 473 234.799 210.859 170.028 1.00 65.49 ATOM 215 C GLU F 473 235.246 211.347 171.398 1.00 65.49 ATOM 216 O GLU F 473 236.434 211.305 171.732 1.00 65.49 ATOM 217 CB GLU F 473 234.481 212.043 169.118 1.00 65.49 ATOM 218 CG GLU F 473 234.231 211.680 167.672 1.00 65.49 ATOM 219 CD GLU F 473 233.968 212.900 166.812 1.00 65.49 ATOM 220 OE1 GLU F 473 234.104 214.033 167.323 1.00 65.49 ATOM 221 OE2 GLU F 473 233.624 212.726 165.624 1.00 65.49 ATOM 222 N MET F 474 234.301 211.821 172.208 1.00 66.32 ATOM 223 CA MET F 474 234.654 212.433 173.483 1.00 66.32 ATOM 224 C MET F 474 234.805 211.392 174.582 1.00 66.32 ATOM 225 O MET F 474 235.747 211.455 175.378 1.00 66.32 ATOM 226 CB MET F 474 233.594 213.462 173.865 1.00 66.32 ATOM 227 CG MET F 474 233.251 214.425 172.744 1.00 66.32 ATOM 228 SD MET F 474 231.729 215.354 173.007 1.00 66.32 ATOM 229 CE MET F 474 231.785 215.669 174.763 1.00 66.32 ATOM 230 N GLY F 475 233.895 210.424 174.637 1.00 61.19 ATOM 231 CA GLY F 475 233.804 209.537 175.775 1.00 61.19 ATOM 232 C GLY F 475 232.760 209.937 176.788 1.00 61.19 ATOM 233 O GLY F 475 232.678 209.316 177.853 1.00 61.19 ATOM 234 N ARG F 476 231.977 210.972 176.498 1.00 67.98 ATOM 235 CA ARG F 476 230.869 211.413 177.327 1.00 67.98 ATOM 236 C ARG F 476 229.715 211.782 176.413 1.00 67.98 ATOM 237 O ARG F 476 229.926 212.137 175.253 1.00 67.98 ATOM 238 CB ARG F 476 231.239 212.626 178.181 1.00 67.98 ATOM 239 CG ARG F 476 232.560 212.504 178.896 1.00 67.98 ATOM 240 CD ARG F 476 232.951 213.804 179.567 1.00 67.98 ATOM 241 NE ARG F 476 233.586 214.747 178.653 1.00 67.98 ATOM 242 CZ ARG F 476 232.949 215.730 178.028 1.00 67.98 ATOM 243 NH1 ARG F 476 231.646 215.897 178.199 1.00 67.98 ATOM 244 NH2 ARG F 476 233.619 216.543 177.224 1.00 67.98 ATOM 245 N GLU F 477 228.497 211.697 176.928 1.00 68.11 ATOM 246 CA GLU F 477 227.380 212.195 176.145 1.00 68.11 ATOM 247 C GLU F 477 227.495 213.707 176.000 1.00 68.11 ATOM 248 O GLU F 477 227.697 214.414 176.991 1.00 68.11 ATOM 249 CB GLU F 477 226.037 211.825 176.769 1.00 68.11 ATOM 250 CG GLU F 477 225.610 210.404 176.475 1.00 68.11 ATOM 251 CD GLU F 477 224.178 210.128 176.881 1.00 68.11 ATOM 252 OE1 GLU F 477 223.559 211.009 177.516 1.00 68.11 ATOM 253 OE2 GLU F 477 223.669 209.036 176.555 1.00 68.11 ATOM 254 N PRO F 478 227.388 214.232 174.787 1.00 70.44 ATOM 255 CA PRO F 478 227.587 215.665 174.588 1.00 70.44 ATOM 256 C PRO F 478 226.498 216.483 175.251 1.00 70.44 ATOM 257 O PRO F 478 225.338 216.073 175.331 1.00 70.44 ATOM 258 CB PRO F 478 227.539 215.814 173.068 1.00 70.44 ATOM 259 CG PRO F 478 226.669 214.708 172.632 1.00 70.44 ATOM 260 CD PRO F 478 226.938 213.564 173.560 1.00 70.44 ATOM 261 N THR F 479 226.877 217.617 175.715 1.00 74.55 ATOM 262 CA THR F 479 225.976 218.616 176.254 1.00 74.55 ATOM 263 C THR F 479 225.337 219.404 175.118 1.00 74.55 ATOM 264 O THR F 479 225.940 219.562 174.052 1.00 74.55 ATOM 265 CB THR F 479 226.727 219.564 177.172 1.00 74.55 ATOM 266 OG1 THR F 479 227.780 220.195 176.436 1.00 74.55 ATOM 267 CG2 THR F 479 227.326 218.798 178.332 1.00 74.55 TER