HEADER GENE REGULATION 31-DEC-69 8OSJ TITLE Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at TITLE 2 position SHL-6.2 (DNA conformation 1) COMPND MOL_ID: 8; COMPND 2 MOLECULE: Basic helix-loop-helix ARNT-like protein 1; COMPND 3 CHAIN: N; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 8OSJ N 69 447 UNP Q9WTL8 BMAL1_MOUSE 69 447 SEQRES 1 N 54 ARG ILE LYS ASN ALA ARG GLU ALA HIS SER GLN ILE GLU SEQRES 2 N 54 LYS ARG ARG ARG ASP LYS MET ASN SER PHE ILE ASP GLU SEQRES 3 N 54 LEU ALA SER LEU VAL PRO THR CYS ASN ALA MET SER ARG SEQRES 4 N 54 LYS LEU ASP LYS LEU THR VAL LEU ARG MET ALA VAL GLN SEQRES 5 N 54 HIS MET ATOM 1 N ARG N 76 173.058 159.529 170.566 1.00600.00 ATOM 2 CA ARG N 76 173.221 158.261 171.267 1.00600.00 ATOM 3 C ARG N 76 171.861 157.687 171.675 1.00600.00 ATOM 4 O ARG N 76 171.417 156.677 171.122 1.00600.00 ATOM 5 CB ARG N 76 174.143 158.422 172.485 1.00600.00 ATOM 6 N ILE N 77 171.199 158.343 172.637 1.00600.00 ATOM 7 CA ILE N 77 169.962 157.850 173.247 1.00600.00 ATOM 8 C ILE N 77 168.792 157.918 172.271 1.00600.00 ATOM 9 O ILE N 77 167.779 157.244 172.450 1.00600.00 ATOM 10 CB ILE N 77 169.640 158.652 174.524 1.00600.00 ATOM 11 N LYS N 78 168.988 158.636 171.173 1.00600.00 ATOM 12 CA LYS N 78 167.990 158.709 170.115 1.00600.00 ATOM 13 C LYS N 78 167.696 157.323 169.555 1.00600.00 ATOM 14 O LYS N 78 166.560 157.018 169.183 1.00600.00 ATOM 15 CB LYS N 78 168.464 159.635 168.993 1.00600.00 ATOM 16 N ASN N 79 168.714 156.465 169.554 1.00600.00 ATOM 17 CA ASN N 79 168.577 155.103 169.059 1.00600.00 ATOM 18 C ASN N 79 167.566 154.312 169.874 1.00600.00 ATOM 19 O ASN N 79 167.037 153.305 169.403 1.00600.00 ATOM 20 CB ASN N 79 169.918 154.398 169.048 1.00600.00 ATOM 21 N ALA N 80 167.412 154.672 171.145 1.00600.00 ATOM 22 CA ALA N 80 166.493 153.959 172.018 1.00600.00 ATOM 23 C ALA N 80 165.057 154.097 171.527 1.00600.00 ATOM 24 O ALA N 80 164.261 153.165 171.651 1.00600.00 ATOM 25 CB ALA N 80 166.613 154.469 173.446 1.00600.00 ATOM 26 N ARG N 81 164.710 155.278 171.015 1.00600.00 ATOM 27 CA ARG N 81 163.365 155.497 170.501 1.00600.00 ATOM 28 C ARG N 81 163.179 154.803 169.161 1.00600.00 ATOM 29 O ARG N 81 162.110 154.256 168.880 1.00600.00 ATOM 30 CB ARG N 81 163.049 156.979 170.373 1.00600.00 ATOM 31 N GLU N 82 164.226 154.815 168.339 1.00600.00 ATOM 32 CA GLU N 82 164.180 154.110 167.065 1.00600.00 ATOM 33 C GLU N 82 164.048 152.613 167.298 1.00600.00 ATOM 34 O GLU N 82 163.259 151.937 166.638 1.00600.00 ATOM 35 CB GLU N 82 165.429 154.404 166.233 1.00600.00 ATOM 36 N ALA N 83 164.792 152.105 168.276 1.00600.00 ATOM 37 CA ALA N 83 164.712 150.699 168.635 1.00600.00 ATOM 38 C ALA N 83 163.324 150.363 169.149 1.00600.00 ATOM 39 O ALA N 83 162.770 149.316 168.814 1.00600.00 ATOM 40 CB ALA N 83 165.759 150.359 169.683 1.00600.00 ATOM 41 N HIS N 84 162.729 151.293 169.891 1.00600.00 ATOM 42 CA HIS N 84 161.396 151.094 170.438 1.00600.00 ATOM 43 C HIS N 84 160.351 150.933 169.342 1.00600.00 ATOM 44 O HIS N 84 159.499 150.046 169.418 1.00600.00 ATOM 45 CB HIS N 84 161.005 152.252 171.359 1.00600.00 ATOM 46 N SER N 85 160.423 151.774 168.313 1.00600.00 ATOM 47 CA SER N 85 159.457 151.690 167.225 1.00600.00 ATOM 48 C SER N 85 159.642 150.406 166.426 1.00600.00 ATOM 49 O SER N 85 158.664 149.801 165.983 1.00600.00 ATOM 50 CB SER N 85 159.587 152.891 166.310 1.00600.00 ATOM 51 N GLN N 86 160.879 149.918 166.367 1.00600.00 ATOM 52 CA GLN N 86 161.159 148.655 165.696 1.00600.00 ATOM 53 C GLN N 86 160.687 147.469 166.530 1.00600.00 ATOM 54 O GLN N 86 160.166 146.493 165.988 1.00600.00 ATOM 55 CB GLN N 86 162.653 148.528 165.387 1.00600.00 ATOM 56 N ILE N 87 160.789 147.591 167.851 1.00600.00 ATOM 57 CA ILE N 87 160.272 146.567 168.751 1.00600.00 ATOM 58 C ILE N 87 158.761 146.485 168.640 1.00600.00 ATOM 59 O ILE N 87 158.190 145.394 168.606 1.00600.00 ATOM 60 CB ILE N 87 160.665 146.848 170.213 1.00600.00 ATOM 61 N GLU N 88 158.118 147.645 168.590 1.00600.00 ATOM 62 CA GLU N 88 156.672 147.709 168.460 1.00600.00 ATOM 63 C GLU N 88 156.204 147.097 167.147 1.00600.00 ATOM 64 O GLU N 88 155.229 146.344 167.125 1.00600.00 ATOM 65 CB GLU N 88 156.197 149.157 168.588 1.00600.00 ATOM 66 N LYS N 89 156.927 147.360 166.060 1.00600.00 ATOM 67 CA LYS N 89 156.574 146.731 164.796 1.00600.00 ATOM 68 C LYS N 89 156.805 145.231 164.843 1.00600.00 ATOM 69 O LYS N 89 155.976 144.460 164.363 1.00600.00 ATOM 70 CB LYS N 89 157.325 147.335 163.615 1.00600.00 ATOM 71 N ARG N 90 157.888 144.808 165.489 1.00600.00 ATOM 72 CA ARG N 90 158.160 143.384 165.616 1.00600.00 ATOM 73 C ARG N 90 157.042 142.691 166.380 1.00600.00 ATOM 74 O ARG N 90 156.622 141.592 166.015 1.00600.00 ATOM 75 CB ARG N 90 159.499 143.130 166.294 1.00600.00 ATOM 76 N ARG N 91 156.517 143.362 167.402 1.00600.00 ATOM 77 CA ARG N 91 155.386 142.825 168.145 1.00600.00 ATOM 78 C ARG N 91 154.161 142.698 167.248 1.00600.00 ATOM 79 O ARG N 91 153.508 141.654 167.231 1.00600.00 ATOM 80 CB ARG N 91 155.048 143.723 169.326 1.00600.00 ATOM 81 N ARG N 92 153.919 143.717 166.421 1.00600.00 ATOM 82 CA ARG N 92 152.791 143.680 165.497 1.00600.00 ATOM 83 C ARG N 92 152.964 142.584 164.453 1.00600.00 ATOM 84 O ARG N 92 152.014 141.872 164.132 1.00600.00 ATOM 85 CB ARG N 92 152.607 145.010 164.775 1.00600.00 ATOM 86 N ASP N 93 154.189 142.421 163.955 1.00600.00 ATOM 87 CA ASP N 93 154.461 141.434 162.916 1.00600.00 ATOM 88 C ASP N 93 154.288 140.018 163.451 1.00600.00 ATOM 89 O ASP N 93 153.773 139.141 162.754 1.00600.00 ATOM 90 CB ASP N 93 155.889 141.587 162.378 1.00600.00 ATOM 91 N LYS N 94 154.714 139.799 164.693 1.00600.00 ATOM 92 CA LYS N 94 154.552 138.503 165.335 1.00600.00 ATOM 93 C LYS N 94 153.078 138.180 165.539 1.00600.00 ATOM 94 O LYS N 94 152.622 137.085 165.205 1.00600.00 ATOM 95 CB LYS N 94 155.315 138.474 166.663 1.00600.00 ATOM 96 N MET N 95 152.314 139.175 165.979 1.00600.00 ATOM 97 CA MET N 95 150.882 138.999 166.170 1.00600.00 ATOM 98 C MET N 95 150.168 138.778 164.845 1.00600.00 ATOM 99 O MET N 95 149.322 137.892 164.732 1.00600.00 ATOM 100 CB MET N 95 150.295 140.209 166.887 1.00600.00 ATOM 101 N ASN N 96 150.565 139.531 163.823 1.00600.00 ATOM 102 CA ASN N 96 149.939 139.427 162.511 1.00600.00 ATOM 103 C ASN N 96 150.204 138.070 161.881 1.00600.00 ATOM 104 O ASN N 96 149.314 137.477 161.270 1.00600.00 ATOM 105 CB ASN N 96 150.434 140.531 161.599 1.00600.00 ATOM 106 N SER N 97 151.410 137.548 162.091 1.00600.00 ATOM 107 CA SER N 97 151.767 136.238 161.570 1.00600.00 ATOM 108 C SER N 97 150.936 135.160 162.244 1.00600.00 ATOM 109 O SER N 97 150.415 134.258 161.584 1.00600.00 ATOM 110 CB SER N 97 153.241 135.971 161.803 1.00600.00 ATOM 111 N PHE N 98 150.717 135.324 163.544 1.00600.00 ATOM 112 CA PHE N 98 149.901 134.391 164.304 1.00600.00 ATOM 113 C PHE N 98 148.433 134.482 163.903 1.00600.00 ATOM 114 O PHE N 98 147.736 133.471 163.854 1.00600.00 ATOM 115 CB PHE N 98 150.033 134.654 165.801 1.00600.00 ATOM 116 N ILE N 99 147.970 135.687 163.585 1.00600.00 ATOM 117 CA ILE N 99 146.583 135.870 163.173 1.00600.00 ATOM 118 C ILE N 99 146.297 135.148 161.862 1.00600.00 ATOM 119 O ILE N 99 145.280 134.465 161.737 1.00600.00 ATOM 120 CB ILE N 99 146.226 137.365 163.052 1.00600.00 ATOM 121 N ASP N 100 147.220 135.239 160.909 1.00600.00 ATOM 122 CA ASP N 100 147.045 134.531 159.646 1.00600.00 ATOM 123 C ASP N 100 147.074 133.019 159.852 1.00600.00 ATOM 124 O ASP N 100 146.258 132.291 159.283 1.00600.00 ATOM 125 CB ASP N 100 148.132 134.931 158.646 1.00600.00 ATOM 126 N GLU N 101 147.976 132.554 160.715 1.00600.00 ATOM 127 CA GLU N 101 148.073 131.127 161.008 1.00600.00 ATOM 128 C GLU N 101 146.833 130.629 161.740 1.00600.00 ATOM 129 O GLU N 101 146.315 129.554 161.437 1.00600.00 ATOM 130 CB GLU N 101 149.326 130.822 161.831 1.00600.00 ATOM 131 N LEU N 102 146.322 131.443 162.657 1.00600.00 ATOM 132 CA LEU N 102 145.123 131.100 163.411 1.00600.00 ATOM 133 C LEU N 102 143.919 130.986 162.486 1.00600.00 ATOM 134 O LEU N 102 143.117 130.059 162.601 1.00600.00 ATOM 135 CB LEU N 102 144.855 132.177 164.476 1.00600.00 ATOM 136 N ALA N 103 143.823 131.905 161.529 1.00600.00 ATOM 137 CA ALA N 103 142.717 131.909 160.580 1.00600.00 ATOM 138 C ALA N 103 142.688 130.635 159.744 1.00600.00 ATOM 139 O ALA N 103 141.622 130.075 159.493 1.00600.00 ATOM 140 CB ALA N 103 142.820 133.118 159.661 1.00600.00 ATOM 141 N SER N 104 143.866 130.121 159.408 1.00600.00 ATOM 142 CA SER N 104 143.976 128.942 158.553 1.00600.00 ATOM 143 C SER N 104 143.452 127.680 159.232 1.00600.00 ATOM 144 O SER N 104 143.224 126.663 158.576 1.00600.00 ATOM 145 CB SER N 104 145.419 128.722 158.144 1.00600.00 ATOM 146 N LEU N 105 143.329 127.722 160.555 1.00600.00 ATOM 147 CA LEU N 105 142.927 126.548 161.316 1.00600.00 ATOM 148 C LEU N 105 141.429 126.527 161.589 1.00600.00 ATOM 149 O LEU N 105 140.914 125.581 162.187 1.00600.00 ATOM 150 CB LEU N 105 143.709 126.496 162.629 1.00600.00 ATOM 151 N VAL N 106 140.739 127.586 161.182 1.00600.00 ATOM 152 CA VAL N 106 139.293 127.663 161.325 1.00600.00 ATOM 153 C VAL N 106 138.617 127.423 159.969 1.00600.00 ATOM 154 O VAL N 106 138.710 128.275 159.088 1.00600.00 ATOM 155 CB VAL N 106 138.891 129.049 161.863 1.00561.64 ATOM 156 N PRO N 107 137.853 126.332 159.820 1.00591.42 ATOM 157 CA PRO N 107 137.227 125.865 158.590 1.00600.00 ATOM 158 C PRO N 107 136.371 126.934 157.918 1.00600.00 ATOM 159 O PRO N 107 136.310 127.007 156.691 1.00553.13 ATOM 160 CB PRO N 107 136.370 124.697 159.095 1.00600.00 ATOM 161 CG PRO N 107 137.127 124.170 160.288 1.00600.00 ATOM 162 CD PRO N 107 137.726 125.397 160.946 1.00581.77 ATOM 163 N THR N 108 135.776 127.812 158.718 1.00600.00 ATOM 164 CA THR N 108 134.922 128.871 158.194 1.00558.91 ATOM 165 C THR N 108 135.724 129.860 157.348 1.00594.90 ATOM 166 O THR N 108 135.197 130.465 156.415 1.00600.00 ATOM 167 CB THR N 108 134.206 129.619 159.336 1.00600.00 ATOM 168 N CYS N 109 137.010 129.997 157.659 1.00600.00 ATOM 169 CA CYS N 109 137.896 130.904 156.940 1.00600.00 ATOM 170 C CYS N 109 138.129 130.426 155.512 1.00600.00 ATOM 171 O CYS N 109 138.523 131.206 154.645 1.00600.00 ATOM 172 CB CYS N 109 139.243 131.030 157.650 1.00599.35 ATOM 173 N ASN N 110 137.921 129.135 155.278 1.00599.21 ATOM 174 CA ASN N 110 138.125 128.547 153.964 1.00595.80 ATOM 175 C ASN N 110 137.118 129.103 152.963 1.00577.35 ATOM 176 O ASN N 110 137.313 129.002 151.751 1.00582.15 ATOM 177 CB ASN N 110 138.023 127.033 154.030 1.00600.00 ATOM 178 N ALA N 111 136.006 129.625 153.472 1.00540.63 ATOM 179 CA ALA N 111 134.965 130.170 152.615 1.00596.61 ATOM 180 C ALA N 111 135.290 131.594 152.172 1.00549.49 ATOM 181 O ALA N 111 134.545 132.192 151.394 1.00549.59 ATOM 182 CB ALA N 111 133.623 130.139 153.334 1.00518.97 ATOM 183 N MET N 112 136.391 132.143 152.677 1.00515.46 ATOM 184 CA MET N 112 136.755 133.521 152.378 1.00560.99 ATOM 185 C MET N 112 137.849 133.574 151.315 1.00577.95 ATOM 186 O MET N 112 138.834 132.843 151.390 1.00600.00 ATOM 187 CB MET N 112 137.223 134.215 153.656 1.00600.00 ATOM 188 N SER N 113 137.707 134.495 150.366 1.00600.00 ATOM 189 CA SER N 113 138.726 134.700 149.337 1.00600.00 ATOM 190 C SER N 113 139.748 135.754 149.757 1.00600.00 ATOM 191 O SER N 113 140.956 135.555 149.625 1.00600.00 ATOM 192 CB SER N 113 138.072 135.109 148.033 1.00600.00 ATOM 193 N ARG N 114 139.247 136.872 150.272 1.00600.00 ATOM 194 CA ARG N 114 140.082 137.973 150.739 1.00541.94 ATOM 195 C ARG N 114 140.610 137.692 152.142 1.00561.92 ATOM 196 O ARG N 114 140.013 136.926 152.896 1.00600.00 ATOM 197 CB ARG N 114 139.279 139.274 150.724 1.00600.00 ATOM 198 N LYS N 115 141.756 138.277 152.477 1.00600.00 ATOM 199 CA LYS N 115 142.335 138.096 153.800 1.00600.00 ATOM 200 C LYS N 115 141.453 138.753 154.854 1.00600.00 ATOM 201 O LYS N 115 141.030 139.899 154.700 1.00600.00 ATOM 202 CB LYS N 115 143.751 138.680 153.852 1.00600.00 ATOM 203 N LEU N 116 141.162 138.007 155.912 1.00600.00 ATOM 204 CA LEU N 116 140.307 138.486 156.989 1.00600.00 ATOM 205 C LEU N 116 141.014 139.510 157.863 1.00600.00 ATOM 206 O LEU N 116 142.223 139.431 158.079 1.00600.00 ATOM 207 CB LEU N 116 139.872 137.302 157.858 1.00600.00 ATOM 208 N ASP N 117 140.241 140.450 158.394 1.00600.00 ATOM 209 CA ASP N 117 140.757 141.451 159.317 1.00600.00 ATOM 210 C ASP N 117 141.057 140.845 160.682 1.00600.00 ATOM 211 O ASP N 117 140.547 139.778 161.027 1.00600.00 ATOM 212 CB ASP N 117 139.774 142.615 159.431 1.00600.00 ATOM 213 N LYS N 118 141.900 141.526 161.450 1.00600.00 ATOM 214 CA LYS N 118 142.401 140.989 162.708 1.00600.00 ATOM 215 C LYS N 118 141.271 140.627 163.663 1.00600.00 ATOM 216 O LYS N 118 141.316 139.593 164.332 1.00600.00 ATOM 217 CB LYS N 118 143.295 142.022 163.390 1.00600.00 ATOM 218 N LEU N 119 140.278 141.504 163.755 1.00600.00 ATOM 219 CA LEU N 119 139.182 141.309 164.693 1.00600.00 ATOM 220 C LEU N 119 138.307 140.133 164.289 1.00600.00 ATOM 221 O LEU N 119 137.941 139.304 165.125 1.00600.00 ATOM 222 CB LEU N 119 138.319 142.575 164.761 1.00600.00 ATOM 223 N THR N 120 138.059 140.007 162.991 1.00600.00 ATOM 224 CA THR N 120 137.223 138.936 162.473 1.00600.00 ATOM 225 C THR N 120 137.841 137.562 162.690 1.00600.00 ATOM 226 O THR N 120 137.137 136.614 163.036 1.00600.00 ATOM 227 CB THR N 120 136.894 139.154 160.988 1.00600.00 ATOM 228 N VAL N 121 139.154 137.453 162.509 1.00600.00 ATOM 229 CA VAL N 121 139.816 136.167 162.697 1.00600.00 ATOM 230 C VAL N 121 139.691 135.691 164.134 1.00600.00 ATOM 231 O VAL N 121 139.397 134.519 164.384 1.00600.00 ATOM 232 CB VAL N 121 141.308 136.255 162.332 1.00600.00 ATOM 233 N LEU N 122 139.896 136.599 165.080 1.00600.00 ATOM 234 CA LEU N 122 139.787 136.247 166.487 1.00600.00 ATOM 235 C LEU N 122 138.357 135.849 166.838 1.00600.00 ATOM 236 O LEU N 122 138.137 134.881 167.567 1.00600.00 ATOM 237 CB LEU N 122 140.240 137.416 167.366 1.00600.00 ATOM 238 N ARG N 123 137.385 136.571 166.282 1.00600.00 ATOM 239 CA ARG N 123 135.981 136.255 166.517 1.00600.00 ATOM 240 C ARG N 123 135.611 134.885 165.963 1.00600.00 ATOM 241 O ARG N 123 134.858 134.137 166.588 1.00600.00 ATOM 242 CB ARG N 123 135.066 137.308 165.904 1.00600.00 ATOM 243 N MET N 124 136.132 134.556 164.786 1.00600.00 ATOM 244 CA MET N 124 135.831 133.269 164.179 1.00600.00 ATOM 245 C MET N 124 136.458 132.128 164.968 1.00600.00 ATOM 246 O MET N 124 135.896 131.033 165.039 1.00600.00 ATOM 247 CB MET N 124 136.291 133.243 162.725 1.00600.00 ATOM 248 N ALA N 125 137.624 132.380 165.560 1.00600.00 ATOM 249 CA ALA N 125 138.289 131.364 166.363 1.00600.00 ATOM 250 C ALA N 125 137.484 131.007 167.610 1.00600.00 ATOM 251 O ALA N 125 137.278 129.827 167.898 1.00600.00 ATOM 252 CB ALA N 125 139.685 131.826 166.746 1.00600.00 ATOM 253 N VAL N 126 136.921 132.015 168.278 1.00600.00 ATOM 254 CA VAL N 126 136.108 131.745 169.464 1.00600.00 ATOM 255 C VAL N 126 134.752 131.155 169.091 1.00600.00 ATOM 256 O VAL N 126 134.205 130.334 169.826 1.00600.00 ATOM 257 CB VAL N 126 135.945 132.994 170.365 1.00600.00 ATOM 258 N GLN N 127 134.191 131.600 167.968 1.00600.00 ATOM 259 CA GLN N 127 132.925 131.057 167.496 1.00600.00 ATOM 260 C GLN N 127 133.073 129.596 167.096 1.00600.00 ATOM 261 O GLN N 127 132.197 128.775 167.368 1.00600.00 ATOM 262 CB GLN N 127 132.398 131.867 166.310 1.00600.00 ATOM 263 N HIS N 128 134.201 129.270 166.469 1.00600.00 ATOM 264 CA HIS N 128 134.497 127.898 166.069 1.00600.00 ATOM 265 C HIS N 128 134.651 126.960 167.266 1.00600.00 ATOM 266 O HIS N 128 134.116 125.851 167.259 1.00600.00 ATOM 267 CB HIS N 128 135.763 127.851 165.210 1.00600.00 ATOM 268 N MET N 129 135.333 127.430 168.316 1.00600.00 ATOM 269 CA MET N 129 135.538 126.654 169.536 1.00600.00 ATOM 270 C MET N 129 134.246 126.558 170.341 1.00600.00 ATOM 271 O MET N 129 134.109 125.700 171.217 1.00600.00 ATOM 272 CB MET N 129 136.653 127.285 170.382 1.00600.00 TER