HEADER GENE REGULATION 31-DEC-69 8OSK TITLE Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at TITLE 2 position SHL+5.8 (composite map) COMPND MOL_ID: 8; COMPND 2 MOLECULE: Basic helix-loop-helix ARNT-like protein 1; COMPND 3 CHAIN: N; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 8OSK N 69 447 UNP Q9WTL8 BMAL1_MOUSE 69 447 SEQRES 1 N 50 ALA ARG GLU ALA HIS SER GLN ILE GLU LYS ARG ARG ARG SEQRES 2 N 50 ASP LYS MET ASN SER PHE ILE ASP GLU LEU ALA SER LEU SEQRES 3 N 50 VAL PRO THR CYS ASN ALA MET SER ARG LYS LEU ASP LYS SEQRES 4 N 50 LEU THR VAL LEU ARG MET ALA VAL GLN HIS MET ATOM 1 N ALA N 80 125.571 110.536 166.349 1.00600.00 ATOM 2 CA ALA N 80 125.208 111.607 165.424 1.00600.00 ATOM 3 C ALA N 80 125.547 111.224 163.982 1.00600.00 ATOM 4 O ALA N 80 124.753 111.464 163.068 1.00527.28 ATOM 5 CB ALA N 80 125.919 112.904 165.808 1.00600.00 ATOM 6 N ARG N 81 126.722 110.613 163.785 1.00600.00 ATOM 7 CA ARG N 81 127.162 110.154 162.468 1.00534.27 ATOM 8 C ARG N 81 126.255 109.057 161.931 1.00552.75 ATOM 9 O ARG N 81 125.983 108.996 160.731 1.00550.78 ATOM 10 CB ARG N 81 128.587 109.627 162.524 1.00600.00 ATOM 11 N GLU N 82 125.776 108.199 162.826 1.00523.19 ATOM 12 CA GLU N 82 124.885 107.123 162.421 1.00529.93 ATOM 13 C GLU N 82 123.580 107.686 161.873 1.00600.00 ATOM 14 O GLU N 82 123.097 107.245 160.830 1.00538.10 ATOM 15 CB GLU N 82 124.593 106.198 163.606 1.00600.00 ATOM 16 N ALA N 83 123.029 108.685 162.558 1.00529.63 ATOM 17 CA ALA N 83 121.801 109.325 162.104 1.00537.09 ATOM 18 C ALA N 83 122.001 109.937 160.728 1.00538.55 ATOM 19 O ALA N 83 121.139 109.828 159.857 1.00539.53 ATOM 20 CB ALA N 83 121.363 110.394 163.093 1.00505.75 ATOM 21 N HIS N 84 123.158 110.556 160.529 1.00537.48 ATOM 22 CA HIS N 84 123.475 111.195 159.261 1.00528.49 ATOM 23 C HIS N 84 123.529 110.175 158.135 1.00518.84 ATOM 24 O HIS N 84 122.986 110.400 157.052 1.00511.64 ATOM 25 CB HIS N 84 124.814 111.932 159.357 1.00552.06 ATOM 26 N SER N 85 124.190 109.054 158.392 1.00520.32 ATOM 27 CA SER N 85 124.358 108.026 157.376 1.00514.09 ATOM 28 C SER N 85 123.028 107.398 156.979 1.00514.98 ATOM 29 O SER N 85 122.813 107.064 155.813 1.00512.52 ATOM 30 CB SER N 85 125.274 106.942 157.901 1.00513.24 ATOM 31 N GLN N 86 122.122 107.261 157.940 1.00518.52 ATOM 32 CA GLN N 86 120.829 106.657 157.656 1.00523.96 ATOM 33 C GLN N 86 119.875 107.642 156.993 1.00517.26 ATOM 34 O GLN N 86 118.953 107.233 156.288 1.00521.72 ATOM 35 CB GLN N 86 120.232 106.058 158.926 1.00534.39 ATOM 36 N ILE N 87 120.135 108.936 157.156 1.00515.82 ATOM 37 CA ILE N 87 119.408 109.941 156.393 1.00509.51 ATOM 38 C ILE N 87 119.768 109.818 154.918 1.00514.96 ATOM 39 O ILE N 87 118.906 109.942 154.048 1.00522.98 ATOM 40 CB ILE N 87 119.690 111.367 156.904 1.00505.77 ATOM 41 N GLU N 88 121.042 109.548 154.641 1.00512.78 ATOM 42 CA GLU N 88 121.473 109.301 153.271 1.00511.45 ATOM 43 C GLU N 88 120.820 108.047 152.709 1.00512.74 ATOM 44 O GLU N 88 120.435 108.014 151.540 1.00516.12 ATOM 45 CB GLU N 88 122.996 109.180 153.193 1.00502.73 ATOM 46 N LYS N 89 120.652 107.030 153.547 1.00505.31 ATOM 47 CA LYS N 89 119.930 105.843 153.113 1.00516.10 ATOM 48 C LYS N 89 118.488 106.190 152.770 1.00516.27 ATOM 49 O LYS N 89 117.972 105.762 151.739 1.00516.07 ATOM 50 CB LYS N 89 119.956 104.751 154.179 1.00523.90 ATOM 51 N ARG N 90 117.850 106.998 153.615 1.00521.08 ATOM 52 CA ARG N 90 116.475 107.415 153.361 1.00522.06 ATOM 53 C ARG N 90 116.370 108.132 152.026 1.00518.48 ATOM 54 O ARG N 90 115.433 107.900 151.261 1.00524.74 ATOM 55 CB ARG N 90 115.972 108.347 154.453 1.00513.05 ATOM 56 N ARG N 91 117.349 108.983 151.735 1.00517.69 ATOM 57 CA ARG N 91 117.391 109.673 150.455 1.00521.39 ATOM 58 C ARG N 91 117.494 108.686 149.301 1.00528.50 ATOM 59 O ARG N 91 116.753 108.788 148.323 1.00539.87 ATOM 60 CB ARG N 91 118.566 110.640 150.403 1.00528.92 ATOM 61 N ARG N 92 118.399 107.720 149.423 1.00520.56 ATOM 62 CA ARG N 92 118.563 106.708 148.388 1.00518.03 ATOM 63 C ARG N 92 117.290 105.889 148.212 1.00530.44 ATOM 64 O ARG N 92 116.894 105.579 147.087 1.00536.25 ATOM 65 CB ARG N 92 119.739 105.793 148.709 1.00523.15 ATOM 66 N ASP N 93 116.641 105.554 149.324 1.00518.64 ATOM 67 CA ASP N 93 115.412 104.772 149.284 1.00522.02 ATOM 68 C ASP N 93 114.276 105.559 148.644 1.00538.38 ATOM 69 O ASP N 93 113.501 105.015 147.853 1.00541.46 ATOM 70 CB ASP N 93 114.999 104.355 150.700 1.00560.53 ATOM 71 N LYS N 94 114.182 106.844 148.978 1.00536.34 ATOM 72 CA LYS N 94 113.148 107.701 148.415 1.00556.67 ATOM 73 C LYS N 94 113.341 107.880 146.915 1.00549.45 ATOM 74 O LYS N 94 112.381 107.821 146.146 1.00556.57 ATOM 75 CB LYS N 94 113.148 109.066 149.107 1.00555.96 ATOM 76 N MET N 95 114.589 108.084 146.498 1.00556.48 ATOM 77 CA MET N 95 114.890 108.259 145.085 1.00587.85 ATOM 78 C MET N 95 114.569 107.003 144.299 1.00600.00 ATOM 79 O MET N 95 113.957 107.069 143.234 1.00393.04 ATOM 80 CB MET N 95 116.355 108.632 144.888 1.00556.60 ATOM 81 N ASN N 96 114.970 105.855 144.833 1.00540.34 ATOM 82 CA ASN N 96 114.718 104.590 144.165 1.00511.96 ATOM 83 C ASN N 96 113.226 104.329 144.059 1.00600.00 ATOM 84 O ASN N 96 112.741 103.843 143.037 1.00537.41 ATOM 85 CB ASN N 96 115.402 103.461 144.903 1.00564.48 ATOM 86 N SER N 97 112.493 104.687 145.109 1.00523.91 ATOM 87 CA SER N 97 111.050 104.515 145.118 1.00600.00 ATOM 88 C SER N 97 110.402 105.348 144.022 1.00499.41 ATOM 89 O SER N 97 109.492 104.886 143.333 1.00600.00 ATOM 90 CB SER N 97 110.487 104.916 146.468 1.00600.00 ATOM 91 N PHE N 98 110.885 106.574 143.853 1.00517.26 ATOM 92 CA PHE N 98 110.347 107.464 142.834 1.00600.00 ATOM 93 C PHE N 98 110.761 107.047 141.431 1.00600.00 ATOM 94 O PHE N 98 109.985 107.185 140.490 1.00600.00 ATOM 95 CB PHE N 98 110.779 108.904 143.088 1.00600.00 ATOM 96 N ILE N 99 111.971 106.527 141.283 1.00600.00 ATOM 97 CA ILE N 99 112.420 106.071 139.974 1.00600.00 ATOM 98 C ILE N 99 111.575 104.902 139.485 1.00600.00 ATOM 99 O ILE N 99 111.136 104.888 138.335 1.00600.00 ATOM 100 CB ILE N 99 113.910 105.686 139.998 1.00600.00 ATOM 101 N ASP N 100 111.316 103.939 140.365 1.00600.00 ATOM 102 CA ASP N 100 110.443 102.825 140.017 1.00600.00 ATOM 103 C ASP N 100 109.006 103.285 139.781 1.00600.00 ATOM 104 O ASP N 100 108.326 102.780 138.885 1.00600.00 ATOM 105 CB ASP N 100 110.473 101.755 141.107 1.00600.00 ATOM 106 N GLU N 101 108.554 104.263 140.562 1.00600.00 ATOM 107 CA GLU N 101 107.210 104.803 140.391 1.00600.00 ATOM 108 C GLU N 101 107.101 105.563 139.074 1.00600.00 ATOM 109 O GLU N 101 106.103 105.457 138.362 1.00600.00 ATOM 110 CB GLU N 101 106.853 105.725 141.561 1.00600.00 ATOM 111 N LEU N 102 108.152 106.299 138.733 1.00600.00 ATOM 112 CA LEU N 102 108.209 107.026 137.473 1.00600.00 ATOM 113 C LEU N 102 108.148 106.051 136.302 1.00600.00 ATOM 114 O LEU N 102 107.433 106.276 135.325 1.00600.00 ATOM 115 CB LEU N 102 109.510 107.847 137.410 1.00600.00 ATOM 116 N ALA N 103 108.877 104.944 136.426 1.00600.00 ATOM 117 CA ALA N 103 108.889 103.897 135.411 1.00600.00 ATOM 118 C ALA N 103 107.498 103.313 135.181 1.00600.00 ATOM 119 O ALA N 103 107.138 102.977 134.056 1.00600.00 ATOM 120 CB ALA N 103 109.844 102.784 135.819 1.00600.00 ATOM 121 N SER N 104 106.711 103.185 136.244 1.00600.00 ATOM 122 CA SER N 104 105.392 102.564 136.134 1.00600.00 ATOM 123 C SER N 104 104.445 103.369 135.250 1.00600.00 ATOM 124 O SER N 104 103.439 102.844 134.769 1.00600.00 ATOM 125 CB SER N 104 104.765 102.387 137.505 1.00600.00 ATOM 126 N LEU N 105 104.744 104.650 135.057 1.00600.00 ATOM 127 CA LEU N 105 103.892 105.513 134.251 1.00600.00 ATOM 128 C LEU N 105 104.263 105.480 132.776 1.00600.00 ATOM 129 O LEU N 105 103.567 106.061 131.944 1.00600.00 ATOM 130 CB LEU N 105 103.974 106.950 134.762 1.00600.00 ATOM 131 N VAL N 106 105.358 104.803 132.454 1.00600.00 ATOM 132 CA VAL N 106 105.797 104.674 131.074 1.00600.00 ATOM 133 C VAL N 106 105.423 103.290 130.542 1.00600.00 ATOM 134 O VAL N 106 105.925 102.286 131.045 1.00600.00 ATOM 135 CB VAL N 106 107.320 104.875 130.985 1.00600.00 ATOM 136 N PRO N 107 104.561 103.207 129.522 1.00600.00 ATOM 137 CA PRO N 107 104.040 101.983 128.943 1.00600.00 ATOM 138 C PRO N 107 105.144 100.998 128.578 1.00600.00 ATOM 139 O PRO N 107 104.996 99.792 128.780 1.00600.00 ATOM 140 CB PRO N 107 103.335 102.505 127.684 1.00600.00 ATOM 141 CG PRO N 107 102.901 103.901 128.054 1.00600.00 ATOM 142 CD PRO N 107 104.025 104.435 128.924 1.00600.00 ATOM 143 N THR N 108 106.254 101.513 128.057 1.00600.00 ATOM 144 CA THR N 108 107.369 100.665 127.660 1.00600.00 ATOM 145 C THR N 108 108.119 100.120 128.873 1.00600.00 ATOM 146 O THR N 108 108.570 98.973 128.867 1.00600.00 ATOM 147 CB THR N 108 108.338 101.420 126.734 1.00600.00 ATOM 148 N CYS N 109 108.261 100.942 129.911 1.00600.00 ATOM 149 CA CYS N 109 108.944 100.509 131.127 1.00600.00 ATOM 150 C CYS N 109 108.088 99.512 131.893 1.00600.00 ATOM 151 O CYS N 109 108.603 98.597 132.536 1.00600.00 ATOM 152 CB CYS N 109 109.244 101.686 132.052 1.00600.00 ATOM 153 N ASN N 110 106.772 99.692 131.819 1.00600.00 ATOM 154 CA ASN N 110 105.842 98.791 132.484 1.00600.00 ATOM 155 C ASN N 110 105.771 97.453 131.761 1.00600.00 ATOM 156 O ASN N 110 105.658 96.400 132.389 1.00600.00 ATOM 157 CB ASN N 110 104.468 99.429 132.573 1.00600.00 ATOM 158 N ALA N 111 105.856 97.498 130.435 1.00600.00 ATOM 159 CA ALA N 111 105.842 96.295 129.611 1.00600.00 ATOM 160 C ALA N 111 107.150 95.514 129.743 1.00600.00 ATOM 161 O ALA N 111 107.169 94.292 129.595 1.00600.00 ATOM 162 CB ALA N 111 105.595 96.657 128.159 1.00600.00 ATOM 163 N MET N 112 108.240 96.221 130.037 1.00600.00 ATOM 164 CA MET N 112 109.538 95.586 130.216 1.00600.00 ATOM 165 C MET N 112 109.576 94.740 131.486 1.00600.00 ATOM 166 O MET N 112 109.273 95.221 132.576 1.00600.00 ATOM 167 CB MET N 112 110.626 96.659 130.264 1.00600.00 ATOM 168 N SER N 113 109.969 93.477 131.332 1.00600.00 ATOM 169 CA SER N 113 110.052 92.536 132.444 1.00600.00 ATOM 170 C SER N 113 111.209 92.858 133.385 1.00600.00 ATOM 171 O SER N 113 111.101 92.686 134.601 1.00600.00 ATOM 172 CB SER N 113 110.207 91.122 131.912 1.00600.00 ATOM 173 N ARG N 114 112.330 93.270 132.810 1.00600.00 ATOM 174 CA ARG N 114 113.559 93.485 133.564 1.00600.00 ATOM 175 C ARG N 114 113.510 94.767 134.383 1.00600.00 ATOM 176 O ARG N 114 112.797 95.712 134.043 1.00600.00 ATOM 177 CB ARG N 114 114.761 93.538 132.632 1.00600.00 ATOM 178 N LYS N 115 114.305 94.809 135.445 1.00600.00 ATOM 179 CA LYS N 115 114.427 96.009 136.261 1.00600.00 ATOM 180 C LYS N 115 115.385 96.989 135.604 1.00600.00 ATOM 181 O LYS N 115 116.603 96.817 135.654 1.00600.00 ATOM 182 CB LYS N 115 114.910 95.662 137.671 1.00600.00 ATOM 183 N LEU N 116 114.819 98.002 134.961 1.00600.00 ATOM 184 CA LEU N 116 115.593 98.988 134.223 1.00600.00 ATOM 185 C LEU N 116 116.510 99.796 135.126 1.00600.00 ATOM 186 O LEU N 116 116.146 100.149 136.248 1.00600.00 ATOM 187 CB LEU N 116 114.651 99.946 133.487 1.00600.00 ATOM 188 N ASP N 117 117.690 100.114 134.608 1.00600.00 ATOM 189 CA ASP N 117 118.644 100.969 135.298 1.00600.00 ATOM 190 C ASP N 117 118.120 102.395 135.399 1.00600.00 ATOM 191 O ASP N 117 117.262 102.812 134.619 1.00600.00 ATOM 192 CB ASP N 117 119.990 100.941 134.580 1.00600.00 ATOM 193 N LYS N 118 118.609 103.127 136.391 1.00600.00 ATOM 194 CA LYS N 118 118.088 104.457 136.681 1.00600.00 ATOM 195 C LYS N 118 118.184 105.392 135.479 1.00600.00 ATOM 196 O LYS N 118 117.253 106.149 135.199 1.00600.00 ATOM 197 CB LYS N 118 118.845 105.068 137.858 1.00550.72 ATOM 198 N LEU N 119 119.303 105.339 134.760 1.00600.00 ATOM 199 CA LEU N 119 119.487 106.202 133.599 1.00600.00 ATOM 200 C LEU N 119 118.474 105.895 132.505 1.00600.00 ATOM 201 O LEU N 119 117.877 106.805 131.931 1.00600.00 ATOM 202 CB LEU N 119 120.908 106.044 133.034 1.00600.00 ATOM 203 N THR N 120 118.260 104.611 132.239 1.00600.00 ATOM 204 CA THR N 120 117.305 104.204 131.216 1.00600.00 ATOM 205 C THR N 120 115.875 104.581 131.575 1.00600.00 ATOM 206 O THR N 120 115.118 105.028 130.712 1.00600.00 ATOM 207 CB THR N 120 117.408 102.698 130.929 1.00600.00 ATOM 208 N VAL N 121 115.500 104.421 132.841 1.00600.00 ATOM 209 CA VAL N 121 114.152 104.798 133.253 1.00600.00 ATOM 210 C VAL N 121 113.907 106.278 133.009 1.00600.00 ATOM 211 O VAL N 121 112.853 106.664 132.504 1.00600.00 ATOM 212 CB VAL N 121 113.915 104.496 134.744 1.00600.00 ATOM 213 N LEU N 122 114.883 107.104 133.366 1.00600.00 ATOM 214 CA LEU N 122 114.757 108.541 133.181 1.00600.00 ATOM 215 C LEU N 122 114.730 108.926 131.703 1.00600.00 ATOM 216 O LEU N 122 113.952 109.792 131.304 1.00600.00 ATOM 217 CB LEU N 122 115.896 109.264 133.905 1.00600.00 ATOM 218 N ARG N 123 115.549 108.268 130.882 1.00600.00 ATOM 219 CA ARG N 123 115.522 108.529 129.444 1.00600.00 ATOM 220 C ARG N 123 114.159 108.196 128.848 1.00600.00 ATOM 221 O ARG N 123 113.630 108.940 128.022 1.00600.00 ATOM 222 CB ARG N 123 116.586 107.727 128.705 1.00600.00 ATOM 223 N MET N 124 113.595 107.071 129.265 1.00600.00 ATOM 224 CA MET N 124 112.295 106.650 128.767 1.00600.00 ATOM 225 C MET N 124 111.173 107.524 129.323 1.00600.00 ATOM 226 O MET N 124 110.172 107.767 128.646 1.00600.00 ATOM 227 CB MET N 124 112.079 105.180 129.102 1.00600.00 ATOM 228 N ALA N 125 111.353 108.017 130.547 1.00600.00 ATOM 229 CA ALA N 125 110.369 108.898 131.167 1.00600.00 ATOM 230 C ALA N 125 110.263 110.229 130.432 1.00600.00 ATOM 231 O ALA N 125 109.158 110.732 130.220 1.00600.00 ATOM 232 CB ALA N 125 110.727 109.139 132.624 1.00600.00 ATOM 233 N VAL N 126 111.399 110.795 130.026 1.00600.00 ATOM 234 CA VAL N 126 111.365 112.072 129.319 1.00600.00 ATOM 235 C VAL N 126 110.801 111.918 127.913 1.00600.00 ATOM 236 O VAL N 126 110.126 112.816 127.409 1.00600.00 ATOM 237 CB VAL N 126 112.760 112.743 129.272 1.00600.00 ATOM 238 N GLN N 127 111.042 110.766 127.296 1.00600.00 ATOM 239 CA GLN N 127 110.443 110.473 126.001 1.00600.00 ATOM 240 C GLN N 127 108.927 110.367 126.121 1.00600.00 ATOM 241 O GLN N 127 108.192 110.819 125.243 1.00600.00 ATOM 242 CB GLN N 127 111.009 109.175 125.424 1.00600.00 ATOM 243 N HIS N 128 108.466 109.769 127.218 1.00600.00 ATOM 244 CA HIS N 128 107.037 109.594 127.466 1.00600.00 ATOM 245 C HIS N 128 106.314 110.922 127.740 1.00600.00 ATOM 246 O HIS N 128 105.169 111.095 127.317 1.00600.00 ATOM 247 CB HIS N 128 106.814 108.601 128.612 1.00600.00 ATOM 248 N MET N 129 106.988 111.873 128.411 1.00600.00 ATOM 249 CA MET N 129 106.418 113.207 128.651 1.00600.00 ATOM 250 C MET N 129 105.984 113.848 127.333 1.00600.00 ATOM 251 O MET N 129 105.194 114.793 127.315 1.00600.00 ATOM 252 CB MET N 129 107.423 114.143 129.355 1.00600.00 TER