ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1delB1 - ECOD Domain | ECOD

ECOD/Domains/e1delB1

e1delB1

UID: 000100790

PDB

Range: B:1-241
PDB: 1DEL chain B(all domains)
UniProt: P04531 (all domains)
Gene: 1

Molecule: DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE

3D Structure

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Related Domains

Browse other domains in DNMK →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyDNMK(2004.1.1.227)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
2'-Deoxyguanosine-5'-MonophosphateDGP
drugDrugBank DB04457

Pfam Families

Deoxynucleotide monophosphate kinase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1DEL RCSB PDB: 1DEL PDBe: 1DEL UniProt: P04531

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.