ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kdoB1 - ECOD Domain | ECOD

ECOD/Domains/e1kdoB1

e1kdoB1

UID: 000100860

PDB

Range: B:3-225
PDB: 1KDO chain B(all domains)
UniProt: P0A6I0 (all domains)
Gene: cmk

Molecule: CYTIDYLATE KINASE

3D Structure

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Related Domains

Browse other domains in Cytidylate_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyCytidylate_kin(2004.1.1.80)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403within 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF02224Cytidylate_kin

Cytidylate kinase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1KDO RCSB PDB: 1KDO PDBe: 1KDO UniProt: P0A6I0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.