ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4khmB1 - ECOD Domain | ECOD

ECOD/Domains/e4khmB1

e4khmB1

UID: 001013389

PDB

Range: B:355-561
PDB: 4KHM chain B(all domains)
UniProt: B1PPP0 (all domains)

Molecule: HCV Polymerase

3D Structure

Loading viewer...

Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_3(4967.1.1.5)

Ligands

in contact, ≤ 4 Å

[4-({[5-cyclopropyl-2-(4-fluorophenyl)-3-(methylcarbamoyl)-1-benzofuran-6-yl](methylsulfonyl)amino}methyl)-2-fluorophenyl]boronic acid1PV

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from .

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 4KHM RCSB PDB: 4KHM PDBe: 4KHM UniProt: B1PPP0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure