ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jkbB1 - ECOD Domain | ECOD

ECOD/Domains/e4jkbB1

e4jkbB1

UID: 001013492

PDB

Range: B:1769-1988
PDB: 4JKB chain B(all domains)
UniProt: Q6P2Q9 (all domains)
Gene: PRPF8

Molecule: Pre-mRNA-processing-splicing factor 8

3D Structure

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Related Domains

Browse other domains in PRP8_domainIV →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyPRP8_domainIV(2484.1.1.62)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

PF12134PRP8_domainIV

PRP8 domain IV core

ClanCL0219RNase_H

External Links

ECOD PDB View: 4JKB RCSB PDB: 4JKB PDBe: 4JKB UniProt: Q6P2Q9

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.