ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1n6rA1 - ECOD Domain | ECOD

ECOD/Domains/e1n6rA1

e1n6rA1

UID: 000101383

PDB

Range: A:15-181
PDB: 1N6R chain A(all domains)
UniProt: P20339 (all domains)
Gene: RAB5A

Molecule: Ras-related protein Rab-5A

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1N6R RCSB PDB: 1N6R PDBe: 1N6R UniProt: P20339

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.