ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4k7sA1 - ECOD Domain | ECOD

ECOD/Domains/e4k7sA1

e4k7sA1

UID: 001014016

PDB

Range: A:1-70
PDB: 4K7S chain A(all domains)
UniProt: P0CG48 (all domains)
Gene: UBC

Molecule: ubiquitin

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOL

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 4K7S RCSB PDB: 4K7S PDBe: 4K7S UniProt: P0CG48

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.