ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zgpA1 - ECOD Domain | ECOD

ECOD/Domains/e3zgpA1

e3zgpA1

UID: 001016337

PDB

Range: A:338-466
PDB: 3ZGP chain A(all domains)
UniProt: Q3Y185 (all domains)
Gene: HMPREF0351_12555

Molecule: ERFK/YBIS/YCFS/YNHG

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid1RG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 3ZGP RCSB PDB: 3ZGP PDBe: 3ZGP UniProt: Q3Y185

Downloads

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