ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2rijA2 - ECOD Domain | ECOD

ECOD/Domains/e2rijA2

e2rijA2

UID: 001016678

PDB

Range: A:0-204
PDB: 2RIJ chain A(all domains)
UniProt: Q0P823 (all domains)
Gene: dapD

Molecule: Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase

3D Structure

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Related Domains

Browse other domains in THDPS_M,THDPS_N →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupTetrahydrodipicolinate N-succinyletransferase N-terminal domain(3610)

HH-groupTetrahydrodipicolinate N-succinyletransferase N-terminal domain(3610.1)

TT-groupTetrahydrodipicolinate N-succinyletransferase N-terminal domain(3610.1.1)

FFamilyTHDPS_M,THDPS_N(3610.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Glycerin)

Citric acidCIT
DrugBank DB04272
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14789THDPS_M

Tetrahydrodipicolinate N-succinyltransferase middle

PF14790THDPS_N

Tetrahydrodipicolinate N-succinyltransferase N-terminal

External Links

ECOD PDB View: 2RIJ RCSB PDB: 2RIJ PDBe: 2RIJ UniProt: Q0P823

Downloads

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