ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1gkiD1 - ECOD Domain | ECOD

ECOD/Domains/e1gkiD1

e1gkiD1

UID: 000102189

PDB

Range: D:76-505
PDB: 1GKI chain D(all domains)
UniProt: Q04230 (all domains)
Gene: trwB

Molecule: CONJUGAL TRANSFER PROTEIN TRWB

3D Structure

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Related Domains

Browse other domains in TrwB_AAD_bind →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyTrwB_AAD_bind(2004.1.1.173)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10412TrwB_AAD_bind

Type IV secretion-system coupling protein DNA-binding domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1GKI RCSB PDB: 1GKI PDBe: 1GKI UniProt: Q04230

Downloads

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