ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1opxB1 - ECOD Domain | ECOD

ECOD/Domains/e1opxB1

e1opxB1

UID: 000102216

PDB

Range: B:1006-1328
PDB: 1OPX chain B(all domains)
UniProt: Q7BK04 (all domains)
Gene: cag-alfa

Molecule: virB11 homolog

3D Structure

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Related Domains

Browse other domains in T2SSE →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyT2SSE(2004.1.1.42)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Nonaethylene glycol)

Sulfate ionSO4
DrugBank DB14546
Nonaethylene glycol2PE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Type II/IV secretion system protein

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1OPX RCSB PDB: 1OPX PDBe: 1OPX UniProt: Q7BK04

Downloads

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