ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vpaA1 - ECOD Domain | ECOD

ECOD/Domains/e1vpaA1

e1vpaA1

UID: 000010290

RepresentativePDB

Range: A:-1-219
PDB: 1VPA chain A(all domains)
UniProt: Q9X1B3 (all domains)
Gene: ispD

Molecule: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

3D Structure

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Related Domains

Browse other domains in IspD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyIspD(7516.1.1.5)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-TriphosphateCTP
drugDrugBank DB02431
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Acetic acid)

Pfam Families

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

ClanCL0110GT-A

External Links

ECOD PDB View: 1VPA RCSB PDB: 1VPA PDBe: 1VPA UniProt: Q9X1B3

Downloads

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Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.