ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2jffA2 - ECOD Domain | ECOD

ECOD/Domains/e2jffA2

e2jffA2

UID: 000103006

PDB

Range: A:94-297
PDB: 2JFF chain A(all domains)
UniProt: P14900 (all domains)
Gene: murD

Molecule: UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

N-[(6-butoxynaphthalen-2-yl)sulfonyl]-D-glutamic acidLK2
drugDrugBank DB08106

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2JFF RCSB PDB: 2JFF PDBe: 2JFF UniProt: P14900

Downloads

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