ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1cvrA3 - ECOD Domain | ECOD

ECOD/Domains/e1cvrA3

e1cvrA3

UID: 001030855

RepresentativePDB

Range: A:138-350
PDB: 1CVR chain A(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: GINGIPAIN R

3D Structure

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Related Domains

Browse other domains in Peptidase_C25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C25(7575.1.1.2)

Ligands

in contact, ≤ 4 Å

D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-phenylalaninamideH37
within 5 Å only
Zinc ionZN
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01364Peptidase_C25

Peptidase family C25

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 1CVR RCSB PDB: 1CVR PDBe: 1CVR UniProt: P95493

Downloads

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