ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qc5X2 - ECOD Domain | ECOD

ECOD/Domains/e3qc5X2

e3qc5X2

UID: 001031079

RepresentativePDB

Range: X:399-524
PDB: 3QC5 chain X(all domains)
UniProt: Q939N5 (all domains)
Gene: gspB

Molecule: Platelet binding protein GspB

3D Structure

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Related Domains

Browse other domains in GspA_SrpA_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyGspA_SrpA_N(11.1.1.292)

Ligands

in contact, ≤ 4 Å

NitrogenHDZ
drugDrugBank DB09152
Potassium ionK
metal
Sodium ionNA

Pfam Families

PF20164GspA_SrpA_N

GspA/SrpA SigLec-like domain

ClanCL0159E-set

External Links

ECOD PDB View: 3QC5 RCSB PDB: 3QC5 PDBe: 3QC5 UniProt: Q939N5

Downloads

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metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.