ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1z4mA1 - ECOD Domain | ECOD

ECOD/Domains/e1z4mA1

e1z4mA1

UID: 000103555

PDB

Range: A:34-227
PDB: 1Z4M chain A(all domains)
UniProt: Q9NPB1 (all domains)
Gene: NT5M

Molecule: 5'(3')-deoxyribonucleotidase

3D Structure

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Related Domains

Browse other domains in NT5C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyNT5C(2006.1.1.10)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU5P
drugDrugBank DB03685
Magnesium ionMG
metal

+ 1 additive (Glycerin)

Pfam Families

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

ClanCL0137HAD

External Links

ECOD PDB View: 1Z4M RCSB PDB: 1Z4M PDBe: 1Z4M UniProt: Q9NPB1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.