ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1wyvB1 - ECOD Domain | ECOD

ECOD/Domains/e1wyvB1

e1wyvB1

UID: 001036586

PDB

Range: B:2-340
PDB: 1WYV chain B(all domains)
UniProt: Q5SKW7 (all domains)
Gene: gcvPB

Molecule: glycine dehydrogenase subunit 2 (P-protein)

3D Structure

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Related Domains

Browse other domains in Aminotran_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyAminotran_5(7577.1.1.3)

Ligands

in contact, ≤ 4 Å

Pyridoxal phosphatePLP
drugDrugBank DB00114
Aminooxyacetic acidAOA
drugDrugBank DB02079within 5 Å only

Shown in the structure viewer.

Pfam Families

PF00266Aminotran_5

Aminotransferase class-V

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 1WYV RCSB PDB: 1WYV PDBe: 1WYV UniProt: Q5SKW7

Downloads

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Drug annotations from DrugDomain.