ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4iefB3 - ECOD Domain | ECOD

ECOD/Domains/e4iefB3

e4iefB3

UID: 001041214

PDB

Range: B:239-366
PDB: 4IEF chain B(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: Gingipain R2 Mature Domain

3D Structure

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Related Domains

Browse other domains in Peptidase_C25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupGingipain R extra N-terminal alpha/beta domain(7576)

HH-groupGingipain R extra N-terminal alpha/beta domain(7576.1)

TT-groupGingipain R extra N-terminal alpha/beta domain(7576.1.1)

FFamilyPeptidase_C25(7576.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01364Peptidase_C25

Peptidase family C25

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 4IEF RCSB PDB: 4IEF PDBe: 4IEF UniProt: P95493

Downloads

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