ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4iefD2 - ECOD Domain | ECOD

ECOD/Domains/e4iefD2

e4iefD2

UID: 001041219

PDB

Range: D:367-579
PDB: 4IEF chain D(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: Gingipain R2 Mature Domain

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_C25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C25(7575.1.1.2)

Ligands

in contact, ≤ 4 Å

Barium ionBA
metal
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01364Peptidase_C25

Peptidase family C25

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 4IEF RCSB PDB: 4IEF PDBe: 4IEF UniProt: P95493

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure