ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ybaC3 - ECOD Domain | ECOD

ECOD/Domains/e1ybaC3

e1ybaC3

UID: 000105135

PDB

Range: C:7-107,C:296-326
PDB: 1YBA chain C(all domains)
UniProt: P0A9T0 (all domains)
Gene: serA

Molecule: D-3-phosphoglycerate dehydrogenase

3D Structure

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Related Domains

Browse other domains in 2-Hacid_dh →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFormate/glycerate dehydrogenase catalytic domain-like(2003.1.11)

FFamily2-Hacid_dh(2003.1.11.1)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845
NadideNAD
drugDrugBank DB14128
Unknown ligand

Pfam Families

PF003892-Hacid_dh

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1YBA RCSB PDB: 1YBA PDBe: 1YBA UniProt: P0A9T0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.