ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1jdsF1 - ECOD Domain | ECOD

ECOD/Domains/e1jdsF1

e1jdsF1

UID: 000106104

PDB

Range: F:3-236
PDB: 1JDS chain F(all domains)
UniProt: P50389 (all domains)
Gene: SSO2706

Molecule: 5'-METHYLTHIOADENOSINE PHOSPHORYLASE

3D Structure

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Related Domains

Browse other domains in PNP_UDP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPeptidyl-tRNA hydrolase-like(2011.2)

TT-groupPeptidyl-tRNA hydrolase-like(2011.2.1)

FFamilyPNP_UDP_1(2011.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Phosphate ion, Tromethamine)

Phosphate ionPO4
DrugBank DB14523
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01048PNP_UDP_1

Phosphorylase superfamily

ClanCL0408PUP

External Links

ECOD PDB View: 1JDS RCSB PDB: 1JDS PDBe: 1JDS UniProt: P50389

Downloads

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