ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4j88B1 - ECOD Domain | ECOD

ECOD/Domains/e4j88B1

e4j88B1

UID: 001064191

PDB

Range: B:3-231
PDB: 4J88 chain B(all domains)
UniProt: P42212 (all domains)
Gene: GFP

Molecule: Green fluorescent protein

3D Structure

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Related Domains

Browse other domains in GFP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupGFP-like(271)

HH-groupGFP-like(271.1)

TT-groupGFP-like(271.1.1)

FFamilyGFP(271.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Sulfate ion, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOLTRS

Pfam Families

Green fluorescent protein

ClanCL0069GFP

External Links

ECOD PDB View: 4J88 RCSB PDB: 4J88 PDBe: 4J88 UniProt: P42212

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.