ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4h54A1 - ECOD Domain | ECOD

ECOD/Domains/e4h54A1

e4h54A1

UID: 001064798

PDB

Range: A:127-296
PDB: 4H54 chain A(all domains)
UniProt: P31129 (all domains)
Gene: dgcZ

Molecule: Diguanylate cyclase YdeH

3D Structure

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Related Domains

Browse other domains in GGDEF →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyGGDEF(304.48.1.14)

Ligands

in contact, ≤ 4 Å

9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)C2E
GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATEGAV
Magnesium ionMG

Pfam Families

Diguanylate cyclase, GGDEF domain

ClanCL0276Nucleot_cyclase

External Links

ECOD PDB View: 4H54 RCSB PDB: 4H54 PDBe: 4H54 UniProt: P31129

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.