ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b2jA1 - ECOD Domain | ECOD

ECOD/Domains/e4b2jA1

e4b2jA1

UID: 001066306

PDB

Range: A:2-65
PDB: 4B2J chain A(all domains)
UniProt: B0R5M0 (all domains)
Gene: OE_3073R

Molecule: DODECIN

3D Structure

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Related Domains

Browse other domains in Dodecin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDodecin subunit-like(872)

HH-groupFlavin-binding protein dodecin-like(872.1)

TT-groupFlavin-binding protein dodecin-like(872.1.1)

FFamilyDodecin(872.1.1.2)

Ligands

in contact, ≤ 4 Å

RiboflavinRBF
drugDrugBank DB00140
Chloride ionCL
Magnesium ionMG

Pfam Families

PF07311Dodecin

Dodecin

ClanCL0319SHS2

External Links

ECOD PDB View: 4B2J RCSB PDB: 4B2J PDBe: 4B2J UniProt: B0R5M0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.