ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2iykB1 - ECOD Domain | ECOD

ECOD/Domains/e2iykB1

e2iykB1

UID: 001069368

PDB

Range: B:70-162
PDB: 2IYK chain B(all domains)
UniProt: Q92900 (all domains)
Gene: UPF1

Molecule: REGULATOR OF NONSENSE TRANSCRIPTS 1

3D Structure

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Related Domains

Browse other domains in UPF1_Zn_bind →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyUPF1_Zn_bind(376.1.1.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09416UPF1_Zn_bind

RNA helicase (UPF2 interacting domain)

ClanCL0229RING

External Links

ECOD PDB View: 2IYK RCSB PDB: 2IYK PDBe: 2IYK UniProt: Q92900

Downloads

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