ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kr0B1 - ECOD Domain | ECOD

ECOD/Domains/e4kr0B1

e4kr0B1

UID: 001070206

PDB

Range: B:381-588
PDB: 4KR0 chain B(all domains)
UniProt: K0BRG7 (all domains)
Gene: S

Molecule: S protein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_RBD →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupBeta-coronavirus spike protein receptor-binding domain(4169.1.1)

FFamilybCoV_S1_RBD(4169.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09408bCoV_S1_RBD

Betacoronavirus spike glycoprotein S1, receptor binding

External Links

ECOD PDB View: 4KR0 RCSB PDB: 4KR0 PDBe: 4KR0 UniProt: K0BRG7

Downloads

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