ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1iniA1 - ECOD Domain | ECOD

ECOD/Domains/e1iniA1

e1iniA1

UID: 000107184

PDB

Range: A:5-228
PDB: 1INI chain A(all domains)
UniProt: Q46893 (all domains)
Gene: ispD

Molecule: 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHETASE

3D Structure

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Related Domains

Browse other domains in IspD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyIspD(7516.1.1.5)

Ligands

in contact, ≤ 4 Å

4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritolCDM
drugDrugBank DB03687
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

ClanCL0110GT-A

External Links

ECOD PDB View: 1INI RCSB PDB: 1INI PDBe: 1INI UniProt: Q46893

Downloads

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