ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1o4yA1 - ECOD Domain | ECOD

ECOD/Domains/e1o4yA1

e1o4yA1

UID: 000001072

RepresentativePDB

Range: A:20-289
PDB: 1O4Y chain A(all domains)
UniProt: G0L322 (all domains)
Gene: agaA

Molecule: beta-agarase A

3D Structure

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Related Domains

Browse other domains in GH16_PorA-D →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyGH16_PorA-D(10.1.1.74)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Sodium ionNA
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF30275GH16_PorA-D

Beta-porphyranase A-D, GH16 domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 1O4Y RCSB PDB: 1O4Y PDBe: 1O4Y UniProt: G0L322

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.