ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4j6wD1 - ECOD Domain | ECOD

ECOD/Domains/e4j6wD1

e4j6wD1

UID: 001086413

PDB

Range: D:5-69
PDB: 4J6W chain D(all domains)
UniProt: Q9HUM0 (all domains)
Gene: hfq

Molecule: Protein hfq

3D Structure

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Related Domains

Browse other domains in Hfq →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyHfq(4.1.1.96)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555
Cytidine-5'-TriphosphateCTP
drugDrugBank DB02431

Pfam Families

Hfq protein

ClanCL0986Sm-like

External Links

ECOD PDB View: 4J6W RCSB PDB: 4J6W PDBe: 4J6W UniProt: Q9HUM0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Cytidine-5'-Monophosphate

drugDrugBank DB03403within 5 Å only

Chloride ionCL

Magnesium ionMG

metal

Hexaethylene glycolP6G

Shown in the structure viewer. Drug annotations from DrugDomain.