ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jalA1 - ECOD Domain | ECOD

ECOD/Domains/e4jalA1

e4jalA1

UID: 001086448

PDB

Range: A:2-155
PDB: 4JAL chain A(all domains)
UniProt: P0AGJ7 (all domains)
Gene: trmL

Molecule: tRNA (cytidine(34)-2'-O)-methyltransferase

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

HEPESEPE
DrugBank DB16872

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 4JAL RCSB PDB: 4JAL PDBe: 4JAL UniProt: P0AGJ7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.