ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kv8B2 - ECOD Domain | ECOD

ECOD/Domains/e4kv8B2

e4kv8B2

UID: 001086533

PDB

Range: B:5-234
PDB: 4KV8 chain B(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: HIV Reverse transcriptase P51

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

11-ethyl-5-methyl-8-[2-(1-oxidanylquinolin-4-yl)oxyethyl]dipyrido[3,2-[1,4]diazepin-6-one1WT
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 4KV8 RCSB PDB: 4KV8 PDBe: 4KV8 UniProt: P04585

Downloads

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