ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yofC1 - ECOD Domain | ECOD

ECOD/Domains/e2yofC1

e2yofC1

UID: 001086844

PDB

Range: C:3-210
PDB: 2YOF chain C(all domains)
UniProt: Q8I4S1 (all domains)
Gene: TMK

Molecule: THYMIDYLATE KINASE

3D Structure

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Related Domains

Browse other domains in Thymidylate_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyThymidylate_kin(2004.1.1.79)

Ligands

in contact, ≤ 4 Å

1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[[(2R,3S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl]thiourea74W

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

PF02223Thymidylate_kin

Thymidylate kinase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2YOF RCSB PDB: 2YOF PDBe: 2YOF UniProt: Q8I4S1

Downloads

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Drug annotations from DrugDomain.