ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b2oB1 - ECOD Domain | ECOD

ECOD/Domains/e4b2oB1

e4b2oB1

UID: 001086885

PDB

Range: B:1-264
PDB: 4B2O chain B(all domains)
UniProt: O31775 (all domains)
Gene: ymdB

Molecule: YMDB PHOSPHODIESTERASE

3D Structure

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Related Domains

Browse other domains in YmdB →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupMetallo-dependent phosphatases(246.2)

TT-groupMetallo-dependent phosphatases(246.2.1)

FFamilyYmdB(246.2.1.10)

Ligands

in contact, ≤ 4 Å

FE (II) IONFE2
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YmdB-like protein

ClanCL0163Calcineurin

External Links

ECOD PDB View: 4B2O RCSB PDB: 4B2O PDBe: 4B2O UniProt: O31775

Downloads

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