ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4bz7D1 - ECOD Domain | ECOD

ECOD/Domains/e4bz7D1

e4bz7D1

UID: 001088554

PDB

Range: D:2-435
PDB: 4BZ7 chain D(all domains)
UniProt: A5H660 (all domains)
Gene: HDAC8

Molecule: HISTONE DEACETYLASE 8

3D Structure

Loading viewer...

Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamideB3N
drugDrugBank DB02565
Potassium ionK
metal
Zinc ion

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 4BZ7 RCSB PDB: 4BZ7 PDBe: 4BZ7 UniProt: A5H660

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.