ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kqrA1 - ECOD Domain | ECOD

ECOD/Domains/e1kqrA1

e1kqrA1

UID: 000001091

RepresentativePDB

Range: A:65-224
PDB: 1KQR chain A(all domains)
UniProt: P12473 (all domains)

Molecule: VP4

3D Structure

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Related Domains

Browse other domains in VP4_haemagglut →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyVP4_haemagglut(10.1.1.6)

Ligands

in contact, ≤ 4 Å

2-O-methyl-5-N-acetyl-alpha-D-neuraminic acidMNA

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Pfam Families

PF00426VP4_haemagglut

Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 1KQR RCSB PDB: 1KQR PDBe: 1KQR UniProt: P12473

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.