ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2j9aA2 - ECOD Domain | ECOD

ECOD/Domains/e2j9aA2

e2j9aA2

UID: 000109154

PDB

Range: A:1-159
PDB: 2J9A chain A(all domains)
UniProt: P00727 (all domains)
Gene: LAP3

Molecule: CYTOSOL AMINOPEPTIDASE

3D Structure

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Related Domains

Browse other domains in Peptidase_M17_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyPeptidase_M17_N(7529.1.1.3)

Ligands

in contact, ≤ 4 Å

(2S,3R)-3-AMINO-2-HYDROXYDECANOIC ACIDAHY
within 5 Å only
Chloride ionCL
within 5 Å only

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Dimethyl sulfoxide)

(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF02789Peptidase_M17_N

Cytosol aminopeptidase family, N-terminal domain

ClanCL0223MACRO

External Links

ECOD PDB View: 2J9A RCSB PDB: 2J9A PDBe: 2J9A UniProt: P00727

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.