ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ublS3 - ECOD Domain | ECOD

ECOD/Domains/e1ublS3

e1ublS3

UID: 000010945

RepresentativePDB

Range: S:1-184
PDB: 1UBL chain S(all domains)
UniProt: P21853 (all domains)
Gene: hydA

Molecule: Periplasmic [NiFe] hydrogenase Small subunit

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

Iron/sulfur clusterSF4

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 1UBL RCSB PDB: 1UBL PDBe: 1UBL UniProt: P21853

Downloads

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