ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ljiB1 - ECOD Domain | ECOD

ECOD/Domains/e4ljiB1

e4ljiB1

UID: 001095705

PDB

Range: B:3-133
PDB: 4LJI chain B(all domains)
UniProt: Q8DJE2 (all domains)
Gene: psbV2

Molecule: Cytochrome c-550-like protein

3D Structure

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Related Domains

Browse other domains in Cytochrom_C550 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCytochrome c-like(107)

HH-groupCytochrome c(107.1)

TT-groupCytochrome c(107.1.1)

FFamilyCytochrom_C550(107.1.1.10)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317within 5 Å only
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14495Cytochrom_C550

Cytochrome c-550 domain

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 4LJI RCSB PDB: 4LJI PDBe: 4LJI UniProt: Q8DJE2

Downloads

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